Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0226 ATGCAGGACCCATCCGCAATATTCCAACCCATGAAGAGCCCTGGCTTCCCCGAACAAGAACAGCTCAAATGCCCGCGATGCGACTCCACAAACACCAAATTCTGCTACTACAACAACTACAATCTCTCTCAGCCACGCCATTTCTGCAAGAATTGCAGAAGGTATTGGACCAAAGGAGGCACTCTTCGCAACATCCCAGTCGGAGGCGGAAGCCGCAAGAACACGAAACGATCATCCACTAACACCAAACGCTCCTCCGCATTACCATCGTCGCCGTCATCGTCCTCTTCTCCGTCCGTTTCACCGGCGATTGCAGAGCCAGCCGGCCCGACCCGGATCTACACCGACCCGATCGGAGGCGGCGGCGGAGGAGGAGGCTTCAGCTCGCTTCTGGCGTCGTCCGGGCATTTCGGGAGCCTTCTGGAAGGTCTGAATTCGAATGGGTCGAGCTTGAAAATGGCGGAAATGGGTGGATTTGGCGGAGGGAATAATGTGAATTCTGTTCAGCGCGTGGTGGTGGATTCGAGCTCGGAGATGATGCAGAGTCATGGCGATTCGGAGAGaTTAGCATTGTGGGCTCAGGCTTTGGCATCCAGCAATGGAAATTCAAACTTAGAATTGACTTTGCAAATGAAAGTAACTGGGAATTTGGATGTACTAGGCAGTGGGATATAG 675 0.5319 MQDPSAIFQPMKSPGFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGTLRNIPVGGGSRKNTKRSSTNTKRSSALPSSPSSSSSPSVSPAIAEPAGPTRIYTDPIGGGGGGGGFSSLLASSGHFGSLLEGLNSNGSSLKMAEMGGFGGGNNVNSVQRVVVDSSSEMMQSHGDSERLALWAQALASSNGNSNLELTLQMKVTGNLDVLGSGI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0226 224 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
Sto9g0226 224 MobiDBLite consensus disorder prediction 63 119 - -
Sto9g0226 224 MobiDBLite consensus disorder prediction 1 21 - -
Sto9g0226 224 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Sto9g0226 224 Pfam Dof domain, zinc finger 20 76 IPR003851 GO:0003677|GO:0006355
Sto9g0226 224 MobiDBLite consensus disorder prediction 71 102 - -
Sto9g0226 224 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 3 195 - -
Sto9g0226 224 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 3 195 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0226 Sto-Chr9 2062459 2066745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0226 14 141 C2C2-Dof Transcription Factor Family AT1G51700 59.259 1.42e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto9g0226 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0226 - - qlo:115988764 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0226 9 2062459 2066745 Sto1g0362 1 2921247 2922116 CCT
Sto9g0226 9 2062459 2066745 Sto9g0226 9 2062459 2066745 ECH