Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0206 ATGAGCCGCTACGACAGTCGCTCCGGCGACCCTGCTTCCTACCGGGACCGGAGGAGtGATTCTGGGCTAGGTGCACCTACAGGATATGGTGGTTCAGTCAACTCTTCATCAAGCAGGAGAGATTACAATGATGGTGGGTCACCAAAGAAACTAAATTTGGATGGCCTCCCTCATTTTGAGAAGAACTTCTATAATGAATCACCAGAGGTGAGGGCAATGACTGAGGCTGAGGTTAATGAGTATAGGCAAAAGAGGGATATAACTGTTGAAGGCCCAGATGTCCCAAAACCTGTCAAGAGCTTTCAAGATGTTGGTTTCCCAGAATATGTTATGCAAGAAATTGTAAAAGCTGGCTTTGTAGAGCCTACACCTATTCAATCCCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATAGGAATTGCAGAAACTGGATCAGGAAAGACACTTGCTTATTTGTTGCCTGCAATCATACATGTTAATGCCCAGCCCATTCTGGAACCTGGAGATGGACCAATTGTGTTAGTTTTGGCTCCTACTCGTGAACTTGCTgtccaaattcaacaagagtctACTAAGTTTGGTTCATCATCAAGGATTAagagtacatgtatatatggtGGGGTACCAAAGGGACCTCAGGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTTATTGCTACTCCAGGAAGGTTGATTGACATGCTTGAGTCAAATCATACAAACTTACGGAGGGTTACATACCTTGTATTGGATGAGGCTGATAGGATGTTGGACATGGGATTTGAGCCCCAACTACGGAAGATTGTCTCTCAGATACGTCCAGATCGTCAAACTTTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAGCAACTAGCAAGGCAGTCCCTTTATAACCCATACAAAGTAATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTGAACTTGCTTGAAGACATCATGGATGGAAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATTACTCGGCAGCTTCGCATGGATGGTTGGCCTGCACTGTCAATTCATGGGGATAAAAGTCAAGCAGAAAGGGATTGGGTGCTGTCAGAGTTCAGATCTGGAAAGAGTCCTATTATGACTGCGACGGATGTTGCAGCACGTGGTTTAGatgTGAAGGATGTAATGTATGTGGTAAATTATGACTTCCCGGGATCACTTGAGGACTATGTTCATCGCATTGGTAGGACTGGAAGAGCTGGTGCAAAAGGAACTGCATACACCTTCTTTACAGCTGCTAATGCCAGATTTGCAAAGGAGCTTATAACCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCTATGGGACGAGGTGCACCTCCTCCACCAACAGGTTACGGAGGTTTCCGTGGAAGAGGTTATGGCAGTGGTCGTCCAGGGAGATGA 1512 0.4385 MSRYDSRSGDPASYRDRRSDSGLGAPTGYGGSVNSSSSRRDYNDGGSPKKLNLDGLPHFEKNFYNESPEVRAMTEAEVNEYRQKRDITVEGPDVPKPVKSFQDVGFPEYVMQEIVKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIIHVNAQPILEPGDGPIVLVLAPTRELAVQIQQESTKFGSSSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQYVDIVSEKQKYDKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVVNYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRGAPPPPTGYGGFRGRGYGSGRPGR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0206 503 SMART helicmild6 358 439 IPR001650 -
Sto9g0206 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Sto9g0206 503 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Sto9g0206 503 Gene3D - 61 308 IPR027417 -
Sto9g0206 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Sto9g0206 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Sto9g0206 503 MobiDBLite consensus disorder prediction 28 42 - -
Sto9g0206 503 CDD SF2_C_DEAD 318 448 - -
Sto9g0206 503 MobiDBLite consensus disorder prediction 474 503 - -
Sto9g0206 503 Gene3D - 309 479 IPR027417 -
Sto9g0206 503 MobiDBLite consensus disorder prediction 1 56 - -
Sto9g0206 503 PANTHER LD32873P 49 490 - -
Sto9g0206 503 SMART ultradead3 118 321 IPR014001 -
Sto9g0206 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Sto9g0206 503 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Sto9g0206 503 MobiDBLite consensus disorder prediction 1 17 - -
Sto9g0206 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Sto9g0206 503 CDD DEADc_DDX5_DDX17 110 305 - -
Sto9g0206 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 49 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0206 Sto-Chr9 1842550 1847717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0206 87 459 Eukaryotic Initiation Factors Gene Family AT3G19760 33.957 7.72e-76 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0206 K12823 - gmx:100781619 889.026