Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0171 ATGGATTATTATTCCCAAGAGGCGCAACTGGAAGCTCACACTGCTACCTACAATGGCGAAGAATTCCGTGAAGAAATTGATCGGCAACAAGAGGGATTTTATTCGGAGCATGATTTTGATGCGAGCGAGAACTTAAATAGTGCGAGTGCTACGATAAAGCCATCGTCCAATCGTCGTGATTCGTCTTCAGGAAAACTCTTCGTTGGTGGCATATCCTGGGAGACTACCGAGGAGGCCTTTTTTAAATACTTCAACAAATTTGGAGAAATAATAGATTCTGTGATAATGACGAATAAATATTCTGGAAGGCCACGGGGATTTGGCTTTGTAACATTTGCTGATTCTGCTGTAGTTGATCAAGTTTTGGCACAGGAACATACCATAGATGGAAGAGTGGTTGAAGTCAAGAGGACAGTGCCTAGAGAGGATATGGAAGGGGTAGGAGTATTGAAAACAAAGAAGATTTTTGTTGGCGGAATACCCCAAATTTTCACCGATGATGAATTGAAGGAGTACTTTTTACCTTATGGTAGGATTGTTGAGCACCAGATTATGCTAGATCATAATACTGGTCGATCTAGAGGCTTTGGGTTTGTCACTTTTGATAGTGAAGATTCAGTTGAAAAGGTTTTTTCTGTGGGAAAAATACATGAACTTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAACCCAAAAGAGGTGGATTTGATTCAAGTAGCAGTTCACGAAAGTCATATGGTGGCTTTGGCAGTGGGACAGATGGATTGGGTAGGCATAATTCTAGAGGACGTAACGATGGAAATAGGGGCAGGCCATATGCAGACTCTGGCATGAATAGAGCATACAGCAACTTTGAGGAGGGGAGCTATGGTGGAATCACTACAAATTCTTACGTTGGCTATGGTGGATATGGTTATGGATACGGTTATGGTGGGCCAATGTATTACTATGGTGGATATGGAGTCAATTCTTTTGGTAATCCTGGTGTTTATGGTGGTGGGATGCCTGTGTATGGAACAGTTGGTGGTTACAATCGCCCCGGTGGCTACGACAGTGGCATTGGAAAATTTGTTGAGAAGGACAATGGCCATGCTGCTGAAAGATACCATCCTTACTAG 1119 0.4281 MDYYSQEAQLEAHTATYNGEEFREEIDRQQEGFYSEHDFDASENLNSASATIKPSSNRRDSSSGKLFVGGISWETTEEAFFKYFNKFGEIIDSVIMTNKYSGRPRGFGFVTFADSAVVDQVLAQEHTIDGRVVEVKRTVPREDMEGVGVLKTKKIFVGGIPQIFTDDELKEYFLPYGRIVEHQIMLDHNTGRSRGFGFVTFDSEDSVEKVFSVGKIHELGGKQVEIKRAEPKRGGFDSSSSSRKSYGGFGSGTDGLGRHNSRGRNDGNRGRPYADSGMNRAYSNFEEGSYGGITTNSYVGYGGYGYGYGYGGPMYYYGGYGVNSFGNPGVYGGGMPVYGTVGGYNRPGGYDSGIGKFVEKDNGHAAERYHPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0171 372 MobiDBLite consensus disorder prediction 227 276 - -
Sto9g0171 372 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Sto9g0171 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 140 IPR000504 GO:0003723
Sto9g0171 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 133 IPR000504 GO:0003723
Sto9g0171 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 222 IPR000504 GO:0003723
Sto9g0171 372 Gene3D - 149 279 IPR012677 -
Sto9g0171 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 56 372 - -
Sto9g0171 372 PANTHER BOULE-RELATED 56 372 IPR037366 GO:0003729
Sto9g0171 372 SMART rrm1_1 154 227 IPR000504 GO:0003723
Sto9g0171 372 SMART rrm1_1 65 136 IPR000504 GO:0003723
Sto9g0171 372 Gene3D - 62 145 IPR012677 -
Sto9g0171 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Sto9g0171 372 SUPERFAMILY RNA-binding domain, RBD 151 256 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0171 Sto-Chr9 1524985 1527627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0171 41 243 Eukaryotic Initiation Factors Gene Family AT1G71770 31.111 2.20e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0171 K12741 - gmx:100818080 419.083