LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g0161	ATGAAATGTGGAGAAAGGATTCAGTGTGGTGGAAGTGTTAAACTTCTCCTCATTGAGATTAATTTGCGTGACTCGTTTTCATGGAAATTTATCTTCTTTGAATATAGTTCTGCATCGTGTGGAATTATGGACCTGCAGAAAGAGAGAATTAAAAGTGGATGCCAAAAGATTCTGGAAGGAATTGATTCTATGTCTTTGGTAAATTTAGATGACCAGCAAGTGCACTCATTAGTAATGATGAGAGAAATAGCTCGTGGGGTTGTTGATGATCGAGACAGAAAGGTGACAAAGAATGACGTGATTAGTACTTTGCGCCACAGTATCGAGAAAATGGTGTGTGCATCCAGGGATATAATCGAAGTATTAAGTAGGATGTCATATGAAAGCTTAGATGACCAAAGAATGCATTTAGTTTTGAGGATGAAAGAAATTGCACATGGGATTGTTGATAAACAAGCTAGAGTTGCAGTAACTATGCATGACATACTTGCAGAACAAGTTGGAGTTGCTGATGAAGGGATGAGAGATAGTCCCACATGTGAGTCAATAAAGACCTGCAATGGTGATGTCCTGATTGATGGGGGACAAAGCATGATAAATGAAGCTGAGATGTTGGAGGTAGAACATGTTTTAAGACTTGAAAATGGAACAAATGAAGTACAAGAGTCTTTGTTGCCAGCATCTTTTCAGCAATTTCTTCTGTGGCCTCCTGATGATTGCATCACCTTAGAATGGGTTCAAGACATGATGTTCACCCTTGAACAGGCTTCGCAAAAGATGTTACCATCTGAATTCTGTCATGTCATACCATCCATTTTGGTAGATAAATTGACAGAGATTGCTTGCAGTGTACTATGTAAAGAGCCAAATTGTGTGGAGATTGATTGTCAAGGAGAAGATTCAAGAGTCATTGTAGTAGGCGACATACATGGGCAGTTTTATGATTTATTGTTTCTATTTAAGCATGTTGGTGTGCCCTCTGAAAACCAGTTTTATGTTTTCAATGGAAATTATGTTGATAAAGGAGCATGGGGCATGGAAGTGTTTTTGGTCTTGCTAGCTTGGAAGATCTTGATGCCTCACCGAGTATATCTACTCCGTGGAAATCATGAATCTAGATATTGCACTGCAAGGTATGGTTTTAAGAAGGAGGTGCGGACTAAATATGGAGATCAGGGTGAAGATATTTACAATAAATGCCTCGAATGTTTCAAGGAGCTTCCATTAGCTTCAGTTATAAGTGGCTGTGTTTATACTACTCATGGAGGGCTTTTCCGTAGTATAAAAGCTGCCCCTTCACGAAAGCCAAAACGGAAGAAGACACAAAAAGTGGATCTTGGGTCTTTAGCCGAGTTATCTGAAGTTAAAAGATCTTCTGTAGATGCCCCTTATGAAGGTcctaatatattattaagtgaCATTCTTTGGTCAAAACCATCTAAAAAAGATGGTTTGAGGGATAATGCTGGTCGAAAATTAGGTCTATGGTGGGGTCCTGATTGCACTGAGGCTTTTTTGAAACAGAACAAATTGaagCTGATCATCAGATCACATGAAGGACCCGATGCAAGGGTTGGTCGGGATGATTTTGGGGATATGCTGTGTGGATTTAGCATGGACCATGATGGAGAATCGGGAAGGCTATATACACTTTTCAGTGCTCCTGACTACCCACAGGTTTTTGGTAAGAAAAGATATAACAATGAAGGAGCATATGCAATATTGAAGTCACCTGATTTTGAAAGTCCTACGTTTCACTCATTCAAATCTACAGAAAGACCAAagGTGGATCCTTATGTTGATTATGATGCAGATGAAATAGATTTTAGCAAACTAGACTCTTGTCAACTGAATCCACTGGCCTCAACCTCTGCTATTTCAGCTCCTCAAAGATCTTATCCCGCCGGGATGACACCCGGGTTTGACTTTGGGGCATTGGGCATTCATAATGCCCCATCTTGGAGTGTCCAGCTTCCTGATGGTTCAGGTGGCACCCAAGTTGTGCAGGTTCCAAGGGCTCCTGTGGTGGAAGGACTGCCTCTTCCTCAAAACATACAGGAACCCCACAAGGCCGCTTATGAGTATTTATTCGAGCTCATTGCTTCCCTAAAACTCATGCTCATGACGAGGGAGGCTGAAAACAAGGCCAGTTTGTCGGTTTTGCGAGCTTCTGTTGCTTCAAGCAATCTTTTGCCCATGACTTCTACTTCTGTCAAGAACAATTTGATGCCTCCGGGCCTCGTTTCCAATCTCCAGGAAGTTCTTCTCAGCAGAAAAGGCGCCGATGAAGGCAACAAATCCAAGGACATTGCTGAAACTACtgaatcttcttcttctactactTCGGCACCTGATGCTTCGGAGGAGAATGGCAGTTCGAAGCCAATTGTGTTGGTCACCAATAGTGATGGGGTTGAGTCTCCTGGCATCACGTATCTCGTTGAAGCTCTTGTTCGTGAAGGCCTCTACAATGTTCATGTCTGCGTTCCTCAATCGGACAAATCAGTTTCGGGGCACTCTGTAACTCTCAGAGAAACAGTGGAAGTGAGTTCTGCTGAAGTTAATGGTGCCACTGCCTTTGAGGTTTCAGGAACTCCTGTGGATTGTGTCTCACTAGCATTATCGGGGGCCTTGTTTTCCTGGTCAAAGCCTAAGCTGGTTATTAGTGGAATCAACCGAGGATCAAGCTGTGGTCATCACATGTTCTACTCAGGAGTTATAGCTGGAGCTAGAGAGGCATCAATATTTGGTGTACCGGCATTATCTATATCACTCAATTGGAAGAAAGAGGAAAGTCAGGAAACAGATTTCAAGGATGCAGCAGCAATCTGTTTACCCTTAATAAATGCGGCTATCAGGGATGTTGAAAAGGGAACTTTTCCCAAAAGCTGCTTTCTGAATATAGAAATTCCCACATCTCCTTTAAGCAACAAGGGTTTCAAGTTGACCAAGCAAAGTACGCAGAGGTCCACTGCAAACTGGCAAGCTGTTTCAACTAGCCGATATCCTGTTAGTCGTTTCTTGGCCAACCAACAAGGCCTTGACCTGAAGCTTGCACAGCTCGGCCGAGATGCCTCTGCAGCTGGTGCGGCTCGTCGATTGACTACacagaaaaaaaatttggagaTTGTTGAATCTGTTGGAGCTGCAGGAAAACCTGATTCCAACAGGGTAAAGAAGTACTTCAGACTAGAGTTCTTGGATAAGCAGCAAGAAGACATAGATGAGGATCTGGATTATAGAGCACTTGAAAGTGGATTTGTTGCAGTAACTCCCCTCTCTGCTTCTCCTCACGTTGAGACTGATATCCAAATGGCAGCTTCTGATTGGATATCTGCTGTGCTTAGTAGTGAACAATAG	3360	0.4202	MKCGERIQCGGSVKLLLIEINLRDSFSWKFIFFEYSSASCGIMDLQKERIKSGCQKILEGIDSMSLVNLDDQQVHSLVMMREIARGVVDDRDRKVTKNDVISTLRHSIEKMVCASRDIIEVLSRMSYESLDDQRMHLVLRMKEIAHGIVDKQARVAVTMHDILAEQVGVADEGMRDSPTCESIKTCNGDVLIDGGQSMINEAEMLEVEHVLRLENGTNEVQESLLPASFQQFLLWPPDDCITLEWVQDMMFTLEQASQKMLPSEFCHVIPSILVDKLTEIACSVLCKEPNCVEIDCQGEDSRVIVVGDIHGQFYDLLFLFKHVGVPSENQFYVFNGNYVDKGAWGMEVFLVLLAWKILMPHRVYLLRGNHESRYCTARYGFKKEVRTKYGDQGEDIYNKCLECFKELPLASVISGCVYTTHGGLFRSIKAAPSRKPKRKKTQKVDLGSLAELSEVKRSSVDAPYEGPNILLSDILWSKPSKKDGLRDNAGRKLGLWWGPDCTEAFLKQNKLKLIIRSHEGPDARVGRDDFGDMLCGFSMDHDGESGRLYTLFSAPDYPQVFGKKRYNNEGAYAILKSPDFESPTFHSFKSTERPKVDPYVDYDADEIDFSKLDSCQLNPLASTSAISAPQRSYPAGMTPGFDFGALGIHNAPSWSVQLPDGSGGTQVVQVPRAPVVEGLPLPQNIQEPHKAAYEYLFELIASLKLMLMTREAENKASLSVLRASVASSNLLPMTSTSVKNNLMPPGLVSNLQEVLLSRKGADEGNKSKDIAETTESSSSTTSAPDASEENGSSKPIVLVTNSDGVESPGITYLVEALVREGLYNVHVCVPQSDKSVSGHSVTLRETVEVSSAEVNGATAFEVSGTPVDCVSLALSGALFSWSKPKLVISGINRGSSCGHHMFYSGVIAGAREASIFGVPALSISLNWKKEESQETDFKDAAAICLPLINAAIRDVEKGTFPKSCFLNIEIPTSPLSNKGFKLTKQSTQRSTANWQAVSTSRYPVSRFLANQQGLDLKLAQLGRDASAAGAARRLTTQKKNLEIVESVGAAGKPDSNRVKKYFRLEFLDKQQEDIDEDLDYRALESGFVAVTPLSASPHVETDIQMAASDWISAVLSSEQ	1119

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g0161	1119	ProSitePatterns	Serine/threonine specific protein phosphatases signature.	366	371	IPR006186	GO:0016787
	Sto9g0161	1119	Hamap	5'/3'-nucleotidase SurE [surE].	795	1115	IPR030048	GO:0008252
	Sto9g0161	1119	SUPERFAMILY	SurE-like	796	1103	IPR036523	GO:0016787
	Sto9g0161	1119	Gene3D	-	238	619	IPR029052	-
	Sto9g0161	1119	Pfam	Survival protein SurE	797	990	IPR002828	GO:0016787
	Sto9g0161	1119	PANTHER	SERINE/THREONINE-PROTEIN PHOSPHATASE	46	714	-	-
	Sto9g0161	1119	SMART	pp2a_7	269	592	IPR006186	GO:0016787
	Sto9g0161	1119	TIGRFAM	surE: 5'/3'-nucleotidase SurE	797	994	IPR002828	GO:0016787
	Sto9g0161	1119	MobiDBLite	consensus disorder prediction	771	795	-	-
	Sto9g0161	1119	Pfam	Calcineurin-like phosphoesterase	302	521	IPR004843	GO:0016787
	Sto9g0161	1119	MobiDBLite	consensus disorder prediction	759	795	-	-
	Sto9g0161	1119	Gene3D	-	785	1111	IPR036523	GO:0016787
	Sto9g0161	1119	SUPERFAMILY	Metallo-dependent phosphatases	264	598	IPR029052	-
	Sto9g0161	1119	PRINTS	Serine/threonine phosphatase family signature	302	329	IPR006186	GO:0016787
	Sto9g0161	1119	PRINTS	Serine/threonine phosphatase family signature	332	359	IPR006186	GO:0016787
	Sto9g0161	1119	PRINTS	Serine/threonine phosphatase family signature	365	389	IPR006186	GO:0016787
	Sto9g0161	1119	PRINTS	Serine/threonine phosphatase family signature	402	428	IPR006186	GO:0016787
	Sto9g0161	1119	PRINTS	Serine/threonine phosphatase family signature	547	563	IPR006186	GO:0016787
	Sto9g0161	1119	PANTHER	SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED	46	714	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g0161	Sto-Chr9	1431425	1444698	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g0161	235	513	Calmodulin-binding Proteins	AT5G63870	53.633	2.94e-100	317

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto9g0161	-		-	gmx:100779241	897.886