Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0144 ATGGGAAATCAGAAGCAAAAGTGGACGgcggaggaagaagaagcattACTCGCCGGGATATCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGATCCTGAATTCGCACCTTTCCTTACTCACCGTTCCAACATTGACCTCAAGGCCATAAGAGTTCCAAAGTGGTATGTTACTGTCGTTGCTCTGAGGGCATTTAATGGTCACATTAGTTTTATGTTAAGCAATGTCACTCATCTTtgtcaaatattttttaatgggcTCAATGTGAGGATGATTGGAGACAAAGATAAGTGGCGGAACCTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATTAAAGCTATTGCTCCTGCCCCAGTTGCCAGTGTTCAAAATGGTACTTCTGCTGCTCCAGTACTTCAAATTGCAGCCTCTGATCTTGTTGTTGATGAGCCTGCTCAAAAAGCACAGGATGTCAAGCATCCTCCACGGTATAATGGAATGGTTTTTGAAGCTCTGTCGACGCTGAAAGATACTAATGGTTCTGACATAAGTACCATTGTTAAATTCATTGAGCAAAGGCACGAGCTTCCTCCGAATTTCAGAAGGGCATTAAGTACGCGATTGAGGAGGCTAGTCGCTCAAGGCAAACTTGAGAAGGTACAAAATTGTTACAGGATAAAAAAGGACGTCCCTTCTGGTGCAAAAACATCACCAATTAAACAAAAGGATGTCTGGCCACATCAACCACCAGCCTCCAGTTTAGTGGCATCTCATGACACAGTAAAGGATGCCGCTGATACTGCAGCCTACAGACTTGCTGAAGCCGAAAACAAATCATTTCTGGCTGCTGAAGCAGTCAAGGAGGCCGAAAGACTTGCAAAGTTGGCTGAAGAAGCTGATGCAATAGTAGAGCTAGTGAAAGAGATTTATGAACAATGTTCGCGTGGTGAGACTTTTGTCTTGGCTTAA 978 0.4213 MGNQKQKWTAEEEEALLAGISKHGPGKWKNILKDPEFAPFLTHRSNIDLKAIRVPKWYVTVVALRAFNGHISFMLSNVTHLCQIFFNGLNVRMIGDKDKWRNLSVNTAAQGSKDKARNPKIKAIAPAPVASVQNGTSAAPVLQIAASDLVVDEPAQKAQDVKHPPRYNGMVFEALSTLKDTNGSDISTIVKFIEQRHELPPNFRRALSTRLRRLVAQGKLEKVQNCYRIKKDVPSGAKTSPIKQKDVWPHQPPASSLVASHDTVKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKLAEEADAIVELVKEIYEQCSRGETFVLA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0144 325 Gene3D - 2 105 - -
Sto9g0144 325 SUPERFAMILY "Winged helix" DNA-binding domain 163 238 IPR036390 -
Sto9g0144 325 CDD SANT_TRF 6 50 - -
Sto9g0144 325 Pfam linker histone H1 and H5 family 165 225 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto9g0144 325 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 50 - -
Sto9g0144 325 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 96 324 - -
Sto9g0144 325 SMART h15plus2 160 226 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto9g0144 325 Pfam Myb-like DNA-binding domain 5 33 IPR001005 -
Sto9g0144 325 MobiDBLite consensus disorder prediction 237 261 - -
Sto9g0144 325 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Sto9g0144 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Sto9g0144 325 SUPERFAMILY Homeodomain-like 2 51 IPR009057 -
Sto9g0144 325 Gene3D - 159 245 IPR036388 -
Sto9g0144 325 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 163 231 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto9g0144 325 PANTHER SINGLE MYB HISTONE 4 1 50 IPR044597 GO:0003691
Sto9g0144 325 PANTHER SINGLE MYB HISTONE 4 96 324 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0144 Sto-Chr9 1313055 1317330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0144 1 325 Single Myb Histone (SMH) Gene Family AT1G72740 43.750 2.08e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto9g0144 Linker_histone 4.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0144 K09422 - pvy:116109826 342.428