Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0138 ATGGATGCTCGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGACTCATAAAAGCCCTTACGACGGATGTTGAAGAATTCTACAACCAATGTGATCCTGTTTGTCTTTTCTGTATTGGTTATTTAATTCTTCCAGAGAAGGAGAATTTGTGCTTGTATGGGTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCAGAGCCTGTGCTGGGCATTAACTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGACGCTTGGTTACTCGCCATTGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTTAATATGATTAATGATCTACCAACAATATTTGAAGTTGTTACTGGTACAGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCGAAGTCCAACTCTAAAGCGTCAATGGGAAAACATTCAAAGGCAACACAATCAagagatgaggaagaagaactGGACGAACTAGACGAAGACGAACATGGGGAGACCTTGTGTGGGGCATGTGGCGAGAATTATGGTACGGACGAATTCTGGATTTGCTGCGACATCTGCGAGAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGTCCCTGA 786 0.4288 MDARAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPVCLFCIGYLILPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSGSKSKSNSKASMGKHSKATQSRDEEEELDELDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0138 261 MobiDBLite consensus disorder prediction 157 182 - -
Sto9g0138 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 256 IPR013083 -
Sto9g0138 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 261 - -
Sto9g0138 261 Pfam PHD-finger 208 257 IPR019787 -
Sto9g0138 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Sto9g0138 261 PANTHER CPG BINDING PROTEIN 3 261 IPR045104 GO:0006355|GO:0042393
Sto9g0138 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Sto9g0138 261 MobiDBLite consensus disorder prediction 157 201 - -
Sto9g0138 261 SUPERFAMILY FYVE/PHD zinc finger 199 258 IPR011011 -
Sto9g0138 261 CDD PHD_AL_plant 207 257 IPR044104 -
Sto9g0138 261 SMART PHD_3 207 255 IPR001965 -
Sto9g0138 261 Pfam Alfin 11 151 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0138 Sto-Chr9 1272211 1276335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0138 5 260 Alfin-like Transcription Factor Family AT3G42790 74.031 9.22e-124 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto9g0138 Alfin 6e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0138 - - gmx:100170700 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0138 9 1272211 1276335 Sto1g0471 1 4176170 4181872 CCT
Sto9g0138 9 1272211 1276335 Sto1g0471 1 4176170 4181872 ECH
Sto9g0138 9 1272211 1276335 Sto9g0138 9 1272211 1276335 ECH