Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0137 ATGCCATCAAAATGTCACCAGCTTCATCATGCCCAACTAATGGGATTGACTACTTTTCGAGTTCCTCTTCCTCTTGATCTTACCGATGAACCGATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTACCGTGCGAAACTTGAAGCACAGAACAAACTCTTCAAAGCTCGGAAACCATATCTTCACGAATCCCGGCATTTACATGCATTAAAGAGGGCTAGAGGTTCTGGCGGGCGCTTTCTCAACACCAGACAACTCCAAGAATCGAAGCTCACGTCAGCGAACCATGGACCAAATGTTTCGGGTGGTACTAGTTTGAATCTGTGTGGAAATATGTCAGAATCCAaagttcatcatcatcatgcagAAAACTATAGAGATGTTGCTTACACTACCTGTTCCGATGTCACAAGTGCATCTAATTGCAATGACATTTTCCAGCAGCAACATGAGTCCAACTCCAGGCTCTCTAGTTACCCTTCTCACATTGGAAGGAACATACAAGGTTTCTCGGCCAGTGCCGGCGGCACGGGGAATCAACACCATGTGTCTATCCTCATGTGA 579 0.4404 MPSKCHQLHHAQLMGLTTFRVPLPLDLTDEPIYVNAKQYHAILRRRQYRAKLEAQNKLFKARKPYLHESRHLHALKRARGSGGRFLNTRQLQESKLTSANHGPNVSGGTSLNLCGNMSESKVHHHHAENYRDVAYTTCSDVTSASNCNDIFQQQHESNSRLSSYPSHIGRNIQGFSASAGGTGNQHHVSILM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0137 192 Gene3D - 28 90 - -
Sto9g0137 192 ProSitePatterns NF-YA/HAP2 subunit signature. 33 53 IPR018362 GO:0003677|GO:0016602
Sto9g0137 192 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 30 85 IPR001289 GO:0003700|GO:0006355
Sto9g0137 192 SMART cbf3 27 88 IPR001289 GO:0003700|GO:0006355
Sto9g0137 192 PANTHER HAP2 SUBUNIT OF HAP COMPLEX 8 174 - -
Sto9g0137 192 PRINTS CCAAT-binding transcription factor subunit B signature 31 53 IPR001289 GO:0003700|GO:0006355
Sto9g0137 192 PRINTS CCAAT-binding transcription factor subunit B signature 62 85 IPR001289 GO:0003700|GO:0006355
Sto9g0137 192 ProSiteProfiles NF-YA/HAP2 family profile. 28 88 IPR001289 GO:0003700|GO:0006355
Sto9g0137 192 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 174 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0137 Sto-Chr9 1268648 1269653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0137 8 190 CCAAT-HAP2 Transcription Factor Family AT1G17590 48.387 1.42e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto9g0137 CBFB_NFYA 8.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0137 K08064 - gmx:100500765 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0137 9 1268648 1269653 Sto9g0137 9 1268648 1269653 ECH