Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0111 atgctGGTAGGGTTGAAAAGAAGTGCAAAAAGTTGTCGATATCGATATTTGAATTACTTGAAACCCGACATAAAGAGAGGTGACATCTCTAAGCATGAAGAAGAATTGATCATGAGATTTCATCGTCAACTTGGTAACAGGTGGGCTTTGATTTCTAAAAAGTTACCGGGAAGAACAGATATCGAAATCAAGAACTacttcaaaatttatttgtcCCAAAATCCAAGTCATAAAGTTGGAGAGAAAAAGACCAAAGTTTTGGAGAAGAATGTGGATGTTGATGATGAAATTGTGAAAGAAGAGTTGAACAGGTGGAGTTTGATTGCGAAGAAGCTACCAGGAAGAACAGATAGTGAAATCAAGAACCATTGGCATGCCTACTTGTCTAAGAAATTGCATGAAAACTCCAAATCATCATCTCCAGAAGTTGCTTTCCCAGAAACAAAAGCCAACACCAAAACTAATTTGGATGACAATATTATTATGGGATCGCTTCAAGCTGATCATAACACAAATACAATAATATCATTTGGTAGTCCTACTTCCTTTCAAATTGAGTATGATAATATTATAAGTgcttttcatcatcatcatcaagatTTCCTCTTCAATCTTTCTCAATATGATTATCAAATTGGAGATGATTATTTCAACTTTGAGTTACCACACAATCTATTTGAAGATCATCACATGGTTGGTtcatcgtcgtcgtcgtcgtcatcTACGAATCTTCAAAGTCAACCATCAGAAAATCAATATGTTTCAGATTTTTGGACGTCGAGTGATCAGTTTCCTTTCTATtactaa 807 0.3172 MLVGLKRSAKSCRYRYLNYLKPDIKRGDISKHEEELIMRFHRQLGNRWALISKKLPGRTDIEIKNYFKIYLSQNPSHKVGEKKTKVLEKNVDVDDEIVKEELNRWSLIAKKLPGRTDSEIKNHWHAYLSKKLHENSKSSSPEVAFPETKANTKTNLDDNIIMGSLQADHNTNTIISFGSPTSFQIEYDNIISAFHHHHQDFLFNLSQYDYQIGDDYFNFELPHNLFEDHHMVGSSSSSSSSTNLQSQPSENQYVSDFWTSSDQFPFYY 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0111 268 Pfam Myb-like DNA-binding domain 27 71 IPR001005 -
Sto9g0111 268 Pfam Myb-like DNA-binding domain 98 128 IPR001005 -
Sto9g0111 268 ProSiteProfiles Myb-like domain profile. 96 128 IPR001005 -
Sto9g0111 268 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Sto9g0111 268 CDD SANT 103 128 IPR001005 -
Sto9g0111 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 103 206 - -
Sto9g0111 268 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 82 - -
Sto9g0111 268 Gene3D - 28 89 - -
Sto9g0111 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Sto9g0111 268 PANTHER TRANSCRIPTION REPRESSOR MYB6-LIKE 103 206 - -
Sto9g0111 268 PANTHER TRANSCRIPTION REPRESSOR MYB6-LIKE 4 82 - -
Sto9g0111 268 SUPERFAMILY Homeodomain-like 6 74 IPR009057 -
Sto9g0111 268 SMART sant 25 73 IPR001005 -
Sto9g0111 268 SMART sant 82 130 IPR001005 -
Sto9g0111 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 132 IPR017930 -
Sto9g0111 268 CDD SANT 30 71 IPR001005 -
Sto9g0111 268 SUPERFAMILY Homeodomain-like 103 135 IPR009057 -
Sto9g0111 268 Gene3D - 95 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0111 Sto-Chr9 1013610 1015017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0111 24 170 MYB Transcription Factor Family AT5G52600 30.464 1.21e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto9g0111 Myb_DNA-binding 8.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0111 K09422 - ming:122085159 127.487