Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0109 ATGGTGCATTTTGTAAATGATATgaactataataataataataataataataataataataataataataataataataataataatgcacaACAAATTGAAGTTGAAGTTGAGAAGAAAGATGATAATATTGAGAAAGTGGGTAGACATGAATTAAAAGGTGCTTGGTCTAGAAAAGAAGACCAAATTCTCTTGAATTATGTGGCTCAACATGGAGAAGGCCAGTGGAAGAAAGTCCCCCAACGAACAGGTTTGAAGAGATGTGGAAAGAGTTGTAGGCATAGATATCTGCATTATTTGAAACCCGGCATTAAGCGTGGCAATATCtctaaggaagaagaagatatgATTATACAGCTTCATCGTCTTCATGGGAACagGTGGACTTTAATAGCTAAAAAGCTACCGGGAAGAACAGATAGTGAAATAAAGAATCACTGGCATGCATATTTGTCTAAGAAATCCGAAGCACAGCTCCAATCATCTCCTTCTTCACATCAAGAACACATATCTTCTGAAGACAGAAATTGTACAATATATTCCCCAGAAGATGGTTTTCCAGAACAAATGAATGTGGAGGATAATCTTATGATGATGGGGATGTCTTCTGAATCTAACAATGAGAGCACTACCACTACTACTACCACCAATACTACCTCAGTTTGCCCTGCATCGTTCGAACTAGAGTATGATGATGCATTTCTTGATGATTTCCTTCTCAACATTTTTcaaaatgatcaaaatattattgGAGATGATTTAATTTGCAACTCCAAGATATCAAGAATGGATGAAGATCACAACAATAACATGGTTGCCtcgtcatcatcttcatctttggATCATCAGTGTCACCAATTACCAGAAGACATTTTggatttttggtcctcaagtgAGTTTGCTTTCTTCGATTGA 915 0.3126 MVHFVNDMNYNNNNNNNNNNNNNNNNNNNAQQIEVEVEKKDDNIEKVGRHELKGAWSRKEDQILLNYVAQHGEGQWKKVPQRTGLKRCGKSCRHRYLHYLKPGIKRGNISKEEEDMIIQLHRLHGNRWTLIAKKLPGRTDSEIKNHWHAYLSKKSEAQLQSSPSSHQEHISSEDRNCTIYSPEDGFPEQMNVEDNLMMMGMSSESNNESTTTTTTTNTTSVCPASFELEYDDAFLDDFLLNIFQNDQNIIGDDLICNSKISRMDEDHNNNMVASSSSSSLDHQCHQLPEDILDFWSSSEFAFFD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0109 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Sto9g0109 304 Gene3D - 108 170 - -
Sto9g0109 304 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 53 284 - -
Sto9g0109 304 CDD SANT 55 100 IPR001005 -
Sto9g0109 304 MobiDBLite consensus disorder prediction 1 28 - -
Sto9g0109 304 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Sto9g0109 304 Pfam Myb-like DNA-binding domain 53 100 IPR001005 -
Sto9g0109 304 Gene3D - 52 105 - -
Sto9g0109 304 PANTHER MYB TRANSCRIPTION FACTOR 53 284 - -
Sto9g0109 304 Coils Coil 23 43 - -
Sto9g0109 304 ProSiteProfiles Myb-like domain profile. 53 100 IPR001005 -
Sto9g0109 304 SMART sant 52 102 IPR001005 -
Sto9g0109 304 SMART sant 105 153 IPR001005 -
Sto9g0109 304 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Sto9g0109 304 SUPERFAMILY Homeodomain-like 53 147 IPR009057 -
Sto9g0109 304 CDD SANT 110 151 IPR001005 -
Sto9g0109 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 100 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0109 Sto-Chr9 952462 954773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0109 53 282 MYB Transcription Factor Family AT3G13540 37.815 1.88e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto9g0109 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0109 K09422 - gmx:547568 190.66