Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0108 ATGATGAGTAGTAGTAGCAGTGCAAGAAATAGGCCTCCTTTCACTCCCTCTCAATGGCAAGAACTTGAACAGCAAGCTCTTGTCTTCAAGTACATGGTCTCTGGCACTCCCATCCCTCCTGATCTCATCTTCTCCATCAAAACAAGCTTGGACTCTTCTATCTCCTCAAGGCTCTTCCCTCACCACCCcaTTGGATGGGGCTGCTTTGAGATGGGTTTTGGGAGAAAAGTAGACCCAGAGCCAGGAAGATGCAGAAGAACAGATGGTAAGAAATGGAGATGCTCCAAGGAAGCATATCCAGACTCTAAGTACTGTGAGAAACACATGCACAGAGATCATGAAAGGGCTTTCTTCCCAGAAGCTTCAGGGTCTAATAATGCTAGAAGCTTCCCTCATCAGGAGTCATACCAACAACAATTATCCATGAGCTCCTACAACAATAAATCCTATTCAAACTTTCAAAACCTGAGTCATAATGGTATTAATAATCCAAGACAAGAGCAACCACATTGCTTTGTTCTGGGCACAGATTTCAAATCAGCAAGAGCAGCCAAAAGTGAGAAAGAGAGTAATATCAGTGATGAGACTACTCAGAGACCACTTCATCACTTCTTTGGGGATCAGTGGCCTCCAAAGACTAGTTCAGATTCTTGGCTTGATCTTGCTTCCAACTCCAGAATCCCCACaggtcatcttcatcatcatcatcatcaatttaCCATCAAATTCATTCATTTTCATCTAGAATTTAATACTAAACTTATATACTGTATTCCCTATGAACCATTTTCTAACCGCGACTCGACAATAAAAGCATACATGCCAAAGGTAAAACCGAAAATCACAAACCCCAAGGTCGAAAATGCTGAATCCATGGAGCAACAACAAATTGATTCCCTTTCAGAAGGACGACCAATTTCTGAATTAGGGTTTCCAGGGGGTTTTCCGCATCTGGGTGTATTCGCCCTTCAATTACTTCTTCGTCCTCAGCTCTCAACGCAAAATCCTTGCCTCCAAACAGAACTTGTATTGATACAGAACCCACGCATACGATCGGTTCGAATCAGAACCCGTCCAGCTCCCTCCTCTCCAAAGACTTGGATCGCATGGGTTTTCCCCCAAATCTTGGCCTGTTTCGTCTACCACGAGTGTGGAACAAACCCACACCCCCAAGATTTGACTTAA 1185 0.427 MMSSSSSARNRPPFTPSQWQELEQQALVFKYMVSGTPIPPDLIFSIKTSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRDHERAFFPEASGSNNARSFPHQESYQQQLSMSSYNNKSYSNFQNLSHNGINNPRQEQPHCFVLGTDFKSARAAKSEKESNISDETTQRPLHHFFGDQWPPKTSSDSWLDLASNSRIPTGHLHHHHHQFTIKFIHFHLEFNTKLIYCIPYEPFSNRDSTIKAYMPKVKPKITNPKVENAESMEQQQIDSLSEGRPISELGFPGGFPHLGVFALQLLLRPQLSTQNPCLQTELVLIQNPRIRSVRIRTRPAPSSPKTWIAWVFPQILACFVYHECGTNPHPQDLT 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0108 394 PANTHER - 6 115 IPR031137 GO:0005634|GO:0006351|GO:0032502
Sto9g0108 394 PANTHER - 114 230 IPR031137 GO:0005634|GO:0006351|GO:0032502
Sto9g0108 394 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 114 230 - -
Sto9g0108 394 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 6 115 - -
Sto9g0108 394 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sto9g0108 394 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Sto9g0108 394 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Sto9g0108 394 Pfam WRC 79 115 IPR014977 -
Sto9g0108 394 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0108 Sto-Chr9 932421 938285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0108 1 116 GRF Transcription Factor Family AT3G13960 74.790 2.12e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Sto9g0108 WRC 6.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0108 - - gmx:100814760 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0108 9 932421 938285 Sto9g0108 9 932421 938285 ECH