Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0073 ATGGATGGGAGGCGAGACCCCAATGCTGAAGCAGAACGGACATTTACAAAGAAGAAAATTCTCTTCACCTGTCTCTTCAAGAGAAAGCTTATACCAAATGCCAAATCCCCAATGGGCCACTTCCCAAGAGTCTCTGAATACGTAAATCGGAGAGTCTCTGACAGTGTTGATATTGTCTCCAACCATTATAAGAGAGCAGCTGCACCGGCTGCAGTAGCCATGGTTGCAGTTGCCATGATTCAAATACCAAGGGCATTTGTGAAGAGATTTGGTGAACTCATTATCATGTCAAAGCAATTTCAACTTAAGACAGCTGATTCTGGAAACTTCTGGAAAGTTGAGGTGGCAAATGCTAATGAACGCATGTACTTCCAGAAGGGTTGGGAGGTATTTGTGAAAGACAATAAATTGGAATATGGGGATTTCATAACTTTCAAGTATGTTGGGAATTCAGCTTTCAAAGTGAAGATGTATGGGTCACATGGGTGTGAGAAGAAATTAGTTCatgttcatcatcatcatgttgAAACCAGTAGTAATgaagaaaaaaggaagaaagtagTAGAAGATGAAGTGGAAGATGTGATTGAGATGATGAAACAAAATAAGGCAAGATCATTGAGAAATCAAATTCCTCCTAGCAAAAGAAGGAAGGGCTCAGCAGATAAAGAAATTCACAGCAAAAATAAGGAAGTCATTCACATTGACTTGGATACTTCTGTTCACAATGAAATTGAAGATTGCAAAGGATTTGTGAAGAAACAAAGCATGAGTGGAGAAGTAGAAAAAGGGGAGAGTCATAGTGCTTTCGCTCTTGAAGAGGCCAACAGATTCAAATCCAAGTATCCTTCCTTTCATGCTGTTATCACTCATTATAACGCCAAATTCTGTTTGTACTTGCCATCAACGTTTTACAGAAAACAtgtgaagaaggagaagattgAAAAACAGAACATAAAACTAGAATGTTCTGGAAGAGTGTGGAATGTGGCATTGATAAAGAATGGAAATGGGCAGCCCAACTATGCAAAACTGAGTGGAGGTTGGGGAGCCTTCTGCAAAGACAACAAGCTCAAGGTTGGTGATGTTTGTGTGTTTGAATTGAGGGAAAATGCTCATTTGAAAGTGCATATTTTCAGAGGGAAAGTGAGTTCTAGATTATGTGAGACTTAA 1173 0.3751 MDGRRDPNAEAERTFTKKKILFTCLFKRKLIPNAKSPMGHFPRVSEYVNRRVSDSVDIVSNHYKRAAAPAAVAMVAVAMIQIPRAFVKRFGELIIMSKQFQLKTADSGNFWKVEVANANERMYFQKGWEVFVKDNKLEYGDFITFKYVGNSAFKVKMYGSHGCEKKLVHVHHHHVETSSNEEKRKKVVEDEVEDVIEMMKQNKARSLRNQIPPSKRRKGSADKEIHSKNKEVIHIDLDTSVHNEIEDCKGFVKKQSMSGEVEKGESHSAFALEEANRFKSKYPSFHAVITHYNAKFCLYLPSTFYRKHVKKEKIEKQNIKLECSGRVWNVALIKNGNGQPNYAKLSGGWGAFCKDNKLKVGDVCVFELRENAHLKVHIFRGKVSSRLCET 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0073 390 CDD B3_DNA 82 158 IPR003340 GO:0003677
Sto9g0073 390 SUPERFAMILY DNA-binding pseudobarrel domain 80 165 IPR015300 -
Sto9g0073 390 ProSiteProfiles B3 DNA-binding domain profile. 298 382 IPR003340 GO:0003677
Sto9g0073 390 SUPERFAMILY DNA-binding pseudobarrel domain 278 380 IPR015300 -
Sto9g0073 390 Pfam B3 DNA binding domain 79 156 IPR003340 GO:0003677
Sto9g0073 390 Pfam B3 DNA binding domain 291 381 IPR003340 GO:0003677
Sto9g0073 390 PANTHER B3 DOMAIN-CONTAINING 81 381 - -
Sto9g0073 390 Gene3D - 264 382 IPR015300 -
Sto9g0073 390 Gene3D - 70 163 IPR015300 -
Sto9g0073 390 ProSiteProfiles B3 DNA-binding domain profile. 65 161 IPR003340 GO:0003677
Sto9g0073 390 SMART B3_2 71 161 IPR003340 GO:0003677
Sto9g0073 390 SMART B3_2 285 382 IPR003340 GO:0003677
Sto9g0073 390 MobiDBLite consensus disorder prediction 205 224 - -
Sto9g0073 390 CDD B3_DNA 283 380 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0073 Sto-Chr9 680842 688367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0073 80 380 B3 DNA Binding Superfamily AT3G18990 26.048 6.61e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto9g0073 B3 4.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0073 - - qlo:115964725 144.436