Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0072 ATGGCACAAATCATTACTCAACTCCCTTCTTTCTTCAAGGTCTTGGTAGCCAAAGACTTCTCCACCCAATTGcAAATACCACAGGTGTTTGTGAACACATTCAGTGACATCTTTATGTCAAACCAATTTCACATTCACACTCATTCTGCTGATCACTTTTGGAAAGTTGAGGTGGAAAGCTTTAATGAACGAACTTATTTCACAAAGGGATGGGAagaatttgtgaaggaaaatCTTTTGGAATTTCTGGACttcatagtttttaaatatgttgatccttcaAGATCGTCTTATGAAAATCAAATCCGAAATAAGggtcaagaaaaagaaagaaaggaggtCACTTATATTGATATAGATCCTCCTACTGATGAGAAAGAAAATGATGATTCCAAAGAGCATGTGAAGAGGAGTATTGCTCTTGCTCATGAAGAAGCAAGAAGGTTCAAATCAAACcatcctttctttcaagttgATCTCCATCCTTCTTATGTCAATTCTTTCATGTACTTGCCAACCAAGTTTTACAAGACCTATTTGAAGGGGAAAGTAGAGGAAGTGAAACTTGAAGTTTCAGGAAGAATTTGGAGTGTAGGATTGATTAGAGTGAATGGAAATCAAAAGTCCAAGTGCAACTCTGCCAGATTAAGTAGAGGTTGGAGAGCATTTTTTGAAGAAAACAAGCTCAAGCCAGGTGAAGTTTGTATCTTTGAAATGAAGAAGTGGAGCAATTTTCAAGTACATATTTTCAGATGTTGA 759 0.3254 MAQIITQLPSFFKVLVAKDFSTQLQIPQVFVNTFSDIFMSNQFHIHTHSADHFWKVEVESFNERTYFTKGWEEFVKENLLEFLDFIVFKYVDPSRSSYENQIRNKGQEKERKEVTYIDIDPPTDEKENDDSKEHVKRSIALAHEEARRFKSNHPFFQVDLHPSYVNSFMYLPTKFYKTYLKGKVEEVKLEVSGRIWSVGLIRVNGNQKSKCNSARLSRGWRAFFEENKLKPGEVCIFEMKKWSNFQVHIFRC 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0072 252 Gene3D - 136 252 IPR015300 -
Sto9g0072 252 CDD B3_DNA 9 92 IPR003340 GO:0003677
Sto9g0072 252 ProSiteProfiles B3 DNA-binding domain profile. 154 252 IPR003340 GO:0003677
Sto9g0072 252 Gene3D - 4 103 IPR015300 -
Sto9g0072 252 SMART B3_2 155 252 IPR003340 GO:0003677
Sto9g0072 252 SMART B3_2 11 106 IPR003340 GO:0003677
Sto9g0072 252 ProSiteProfiles B3 DNA-binding domain profile. 9 106 IPR003340 GO:0003677
Sto9g0072 252 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 92 - -
Sto9g0072 252 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 98 251 - -
Sto9g0072 252 CDD B3_DNA 154 251 IPR003340 GO:0003677
Sto9g0072 252 SUPERFAMILY DNA-binding pseudobarrel domain 7 94 IPR015300 -
Sto9g0072 252 Pfam B3 DNA binding domain 11 103 IPR003340 GO:0003677
Sto9g0072 252 Pfam B3 DNA binding domain 155 251 IPR003340 GO:0003677
Sto9g0072 252 SUPERFAMILY DNA-binding pseudobarrel domain 149 251 IPR015300 -
Sto9g0072 252 PANTHER B3 DOMAIN-CONTAINING 6 92 - -
Sto9g0072 252 PANTHER B3 DOMAIN-CONTAINING 98 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0072 Sto-Chr9 668892 670456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0072 103 249 B3 DNA Binding Superfamily AT3G18990 28.931 2.20e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto9g0072 B3 2.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0072 - - rcn:112183766 107.071