Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0062 ATGTGGGATCAGAAGACTGGGCGTTCTAGGGGATTTGGTTTTGTTTCATTCCGTAATCAACAGGATGCTCAAGGTGCAATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAAATACGATGCAACTGGGCAACAAAAGGTGCTGGTTCTAATGAAGACAAGCAAAACTCAGACACAAAAAGTGTGGTTGAACTAACAAATGGTTCATCTGATGGTAAAGAGGCCACTAACAGTGATGCTCCAGAAAACAATCCTCAATTTACCACTGTCTACGTGGGAAATCTTGCTCCAGAGGTAACCCAGCTTGATCTCCATCGCCACTTCCATGCTCTTGGTGCTGGAATGATAGAGGAGGTTCGTGTTCAGCGGGATAAAGGGTTTGGATTTGTGAGGTACAGTACTCACGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATTCCCAGTCTATTCTCTGTGGCAAACCAATTAAGTGCTCCTGGGGGAGCAAACCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGTGGCTGCACCTCTGCCAGGTCTCTCTGCAGCTGATCTTTTGGCCTATGAAAGACAGCTAGCAATTAGCAAAATGAGTGGTGTACATCCCCTGCTACCTCCTCAAGGACAACATCCTCTTAAACAAGCAGCTATTGGAGGAAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCTGCTGCACAACAAATGATGTACTACCAGTAA 744 0.4637 MWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWATKGAGSNEDKQNSDTKSVVELTNGSSDGKEATNSDAPENNPQFTTVYVGNLAPEVTQLDLHRHFHALGAGMIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNSQSILCGKPIKCSWGSKPTPPGTASNPLPPPVAAPLPGLSAADLLAYERQLAISKMSGVHPLLPPQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0062 247 Gene3D - 67 168 IPR012677 -
Sto9g0062 247 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 242 - -
Sto9g0062 247 SMART rrm1_1 90 160 IPR000504 GO:0003723
Sto9g0062 247 SUPERFAMILY RNA-binding domain, RBD 1 51 IPR035979 GO:0003676
Sto9g0062 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 164 IPR000504 GO:0003723
Sto9g0062 247 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
Sto9g0062 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Sto9g0062 247 CDD RRM3_TIA1_like 89 164 - -
Sto9g0062 247 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 1 242 - -
Sto9g0062 247 MobiDBLite consensus disorder prediction 46 87 - -
Sto9g0062 247 Gene3D - 1 63 IPR012677 -
Sto9g0062 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Sto9g0062 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0062 Sto-Chr9 559843 562706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0062 7 164 Eukaryotic Initiation Factors Gene Family AT1G49760 28.834 1.49e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0062 K13201 - gmx:100781227 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0062 9 559843 562706 Sto9g0062 9 559843 562706 ECH