Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0034 atgtGTGGAGGAGCTATTATCTCCGACTTCATTCCGGCGGGGGTGGCCGGCGCCAGGAGGGCGCGACGTCTCACCGCCGACTATCTGTGGCCCGATTTGAAGAAGCTCCCCTCGGGTGGGAGATTCTCGAAGCATCTCAGGCCTGAACCTGTCATCAACTTGGATGATGATTTTGAAGCTGACTTTAGGCAGTTCAAGGACGATTTCGATATCGATGAGGACGATGACGATGTTTTAATGGCTGATGTTAAGTCCTTTGCTTTCTCCGCCACCAAGCCCTCCAAGAAGAAGACCCTGTCTCGCGGATCTACAGCTGTGAAAGTTGAGGAATCCGATGAGCATGATGAGAAGTCTGTGAAGAGAAGGAGGAAGAATCAATATAGAGGAATCCGCCAACGTCCATGGGGCAAGTGGGCAGCTGAGATTCGTGACCCAAGAAAGGGGGTTCGTGTCTGGCTTGGCACCTTCAACACCGCTGAAGAAGCTGCAAGAGCTTATGATGCCGAAGCACGCAGGATTCGTGGCAAGAAAGCCAAAGTGAACTTCCCTGATGAGGTCTCAGGTGCTTCCCCAAAACGCCTCAAGAAAAATATTGTTCCAAAGGCTAATCTGAACTCTGCTCAGCCAAGTGTGCCCCAGAGTTTCAATCTTGGTATCAATCTTGATGATTACTATGGCTCTATGGGTCTGGTGGAAGAGAAGCCAAAGGTTAACCAGTTTGATGCTGCTAACATGGGATCCTTCCCTGGAAGTAACGATGGGCTCCCATCGCTTGCACCATCTGATGATGTCACTCTGCATTTTGGTTCAGATCAGGCCAGCAACTCATTTGACTATTCAGATCTTGGATGGGGCAGCGAACAAGGCCCAAAGACTCCAGAAATCTCATCCATACTTTCTGATGACTCTGGCAACCAGAACAGCAACAACAACATGAAATACTCAAACTCTCAGAATGTGGTATCTGTGGAAACTGAATCTGCAAAGACACTCTGGGATGAGCTCGCAGAGATCGAATCCCATCTGAAGTTCTTCCAGGCACCTTATCTTGAAGGAAGCTGGGAGGATGATGCTTCACTAGGAAGCCTGCTGAGCGGAGACACAACCCAGGATGGCGCAAACTCATTGGACCTTTGGACCTTTGATGACCTTCCTCCTTCCCTGATGGGGGGAGCTTTCTGA 1182 0.4975 MCGGAIISDFIPAGVAGARRARRLTADYLWPDLKKLPSGGRFSKHLRPEPVINLDDDFEADFRQFKDDFDIDEDDDDVLMADVKSFAFSATKPSKKKTLSRGSTAVKVEESDEHDEKSVKRRRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDEVSGASPKRLKKNIVPKANLNSAQPSVPQSFNLGINLDDYYGSMGLVEEKPKVNQFDAANMGSFPGSNDGLPSLAPSDDVTLHFGSDQASNSFDYSDLGWGSEQGPKTPEISSILSDDSGNQNSNNNMKYSNSQNVVSVETESAKTLWDELAEIESHLKFFQAPYLEGSWEDDASLGSLLSGDTTQDGANSLDLWTFDDLPPSLMGGAF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0034 393 CDD AP2 126 184 IPR001471 GO:0003700|GO:0006355
Sto9g0034 393 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Sto9g0034 393 SUPERFAMILY DNA-binding domain 126 185 IPR016177 GO:0003677
Sto9g0034 393 MobiDBLite consensus disorder prediction 102 122 - -
Sto9g0034 393 PANTHER DNA-BINDING DOMAIN 1 385 IPR044808 GO:0003700|GO:0009873
Sto9g0034 393 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Sto9g0034 393 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Sto9g0034 393 MobiDBLite consensus disorder prediction 279 317 - -
Sto9g0034 393 MobiDBLite consensus disorder prediction 98 126 - -
Sto9g0034 393 MobiDBLite consensus disorder prediction 290 317 - -
Sto9g0034 393 PANTHER EREBP TRANSCRIPTION FACTOR 1 385 - -
Sto9g0034 393 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Sto9g0034 393 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Sto9g0034 393 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0034 Sto-Chr9 326497 328771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0034 1 390 AP2-EREBP Transcription Factor Family AT3G14230 43.596 3.71e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto9g0034 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0034 K09286 - mnt:21386046 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0034 9 326497 328771 Sto9g0034 9 326497 328771 ECH