Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0031 CTGTCCGTAGATGAATTCTACTTCTCTGCCTTATACGATGAAGAAGACATATTTCCAATCTCCGATGAGAAATACGCAGAACAGATTCAGCTCCAAGAGGCTCTCATGGCCCCATACATGATGACGACCACAATATTGATCCCGggcaaagagaagaagaatctAGAAACAGGGGAATCTTCTAGAACCACCAATAGGCAGCTCCCCAGCGTAAGCTTCTGCGAGATCTGCATGGACACAAAACCCATTCAGGAGATGTTCCGAAACAACAACACGTGCGCCCACATGTTCTGTACGGAATGCACGGCCTCGCACGTGGCAGCGAAGCTTCAAGAGAACATCTCAATGGTGAGATGTCCCCACCCGGAATGCAGGGGAATGTTGGATCCCCTGTTGTGTCGGAGCATCATACCGGAGGAGGTGTTTGGGAGGTGGGAAAATGCGTTGTGCGAGAATGTGGTGCTCGGGAGCCAGAAATTCTACTGCCCCTTCAAGGATTGCTCGGCGATGATGGTGGACGAGGGAGGGGATGGGGAGGTGGTGACATCCTCGGAGTGTCCGAATTGTAATAGGTTGTTCTGTGCGCAGTGCAAGGTGGGGTGGCATGCAGGTGTGGAGTGTGGGGAGTTTCAGAGGTTGAAGAAAGGGGAGAGGGAGAAGGAGGATTTGATGCTGATGGAGCTTGCTAAGAACAAGAGATGGAGAAGATGCCCTCAGTGTAGGTTTTATGTGGAGAAGAACCAGGGATGCCATCATATTTCTTGCAGGTGTGGTTATCAATTTTGTTATGGCTGTGGATCTCATTGGGATCAGCTTCATCATTGTTGA 828 0.4915 LSVDEFYFSALYDEEDIFPISDEKYAEQIQLQEALMAPYMMTTTILIPGKEKKNLETGESSRTTNRQLPSVSFCEICMDTKPIQEMFRNNNTCAHMFCTECTASHVAAKLQENISMVRCPHPECRGMLDPLLCRSIIPEEVFGRWENALCENVVLGSQKFYCPFKDCSAMMVDEGGDGEVVTSSECPNCNRLFCAQCKVGWHAGVECGEFQRLKKGEREKEDLMLMELAKNKRWRRCPQCRFYVEKNQGCHHISCRCGYQFCYGCGSHWDQLHHC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0031 275 Gene3D - 204 275 - -
Sto9g0031 275 SUPERFAMILY RING/U-box 218 275 - -
Sto9g0031 275 ProSiteProfiles TRIAD supradomain profile. 70 275 IPR044066 -
Sto9g0031 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 157 IPR013083 -
Sto9g0031 275 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 3 275 - -
Sto9g0031 275 SUPERFAMILY RING/U-box 153 212 - -
Sto9g0031 275 Pfam IBR domain, a half RING-finger domain 227 274 IPR002867 -
Sto9g0031 275 Pfam IBR domain, a half RING-finger domain 147 207 IPR002867 -
Sto9g0031 275 SMART ibrneu5 217 275 IPR002867 -
Sto9g0031 275 SMART ibrneu5 143 207 IPR002867 -
Sto9g0031 275 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 3 275 IPR031127 GO:0004842|GO:0016567
Sto9g0031 275 ProSiteProfiles Zinc finger RING-type profile. 74 120 IPR001841 -
Sto9g0031 275 SUPERFAMILY RING/U-box 71 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0031 Sto-Chr9 288330 289653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0031 93 267 C3H Transcription Factor Family AT2G19610 27.717 1.37e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0031 K11975 - jre:109004923 378.252