Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0002 ATGGAATTACTGATGCAAGTAAAAGGATGTTGTAAtgatagagaagaagaagaagaggaagaggaagaggaagaagtagaagcagaagcagaactTACAAAAGAGGAAAGCAGCAGCAGCAAGCAGTATCATCATCCCCTTCTTCTCTCATCCGCAAATCGTAATTCGTGGTTGGGGCTTCATGATCATCACTCTCCAGATGCCACCACGGCCACGGATTCTCCCAATTCATCGTCTGGATTAGGGTTATTAGCATCCTCCAATTTCCCCAATACTCACGCCAAAATCGACCTCATGGACCTATCACTCGCGCCGGGAATCGGGAACCGAAGCAAAGACATGAGCGAATTAGAATCattagaagaggaagaaggcaataataacaacaatacgAATTTCCATGGAGGAGGAGGGAGCAGCAGTAATCAGAACGAGAGTAGCAAGGTTATCGAGAAAGAGCACATGTTCGATAAAGTCGTCACACCGAGTGACGTGGGCAAGCTTAACCGCCTCGTGATTCCCAAGCAACACGCGGAAAAGTACTTCCCTCTGGATTCCTCCTCCAACGAGAAAGGCCTGCTCCTGAATTTCGAGGATCGTAACGGCAAGCTCTGGCGATTCCGTTACTCTTACTGGAACAGCAGCCAGAGCTATGTCATGACCAAAGGATGGAGCCGATTCGTCAAGGAGAAGAAGCTCGACGCCGGCGACATTGTCTCCTTCCAGCGCGGCGCCGCCGAGTCCCACCGCCATAGGTTGTACATAGATTGGCGGCGTAGAcctgatcatcatcatcacgcACCGGGAGTCTCTGATCCTTCTTTCGTTAcaccttttctttttcatccGAATCATGCGAATCAACTCTCGCAGTATTCGATCCGATGGAGCAACCGGTTATACTCTCTTCCGTCTCCGTCTCCGCAGCCGCCGCCTCGGCCGCCACAGCTCAATTACAGCAACATGTTTCCGTTTCAGCAAGAGCGAAATCAGCCGTGGAATCAGCATCATCATCAAGTTCattataatgtgataaattcTGGATCTGGTTCCATGTATCCGAACTTAATAGGGCAAAGAGAGCAGCAAAATGTTCCGATGATAATCGATTCGGTGCCGGTtgatcattatcatcatcttcaGCATCATCATCAGCACGGTAAGAGTAGTGGTAGTGGTAGTAGTACTAATGCTACTGCAGGAAAAAGGCTTAGGCTATTTGGAGTAAACATGGAatgtgcttcttcttcttcttcttcttcagcggAAGAAGCCAGATGTTGTAATGTGACTGCAATGGCGAATAATTCATCAATTCCACCTCCTCAACAGTACCTGAGGATGCCACATGAAGATCCAATTTCATTGTCGTCTTCGTCGTCGTcatcagcagcagcagcagcgaGGTTTCAGAATCATCAGAAAGTGGGAACTAGTTCGATGCTTTTTGATTTGGATCCCTCCTTGCAATACCGTAATAAGGCGCAGAAAGTTGTACAGCTGTAA 1506 0.413 MELLMQVKGCCNDREEEEEEEEEEEVEAEAELTKEESSSSKQYHHPLLLSSANRNSWLGLHDHHSPDATTATDSPNSSSGLGLLASSNFPNTHAKIDLMDLSLAPGIGNRSKDMSELESLEEEEGNNNNNTNFHGGGGSSSNQNESSKVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGAAESHRHRLYIDWRRRPDHHHHAPGVSDPSFVTPFLFHPNHANQLSQYSIRWSNRLYSLPSPSPQPPPRPPQLNYSNMFPFQQERNQPWNQHHHQVHYNVINSGSGSMYPNLIGQREQQNVPMIIDSVPVDHYHHLQHHHQHGKSSGSGSSTNATAGKRLRLFGVNMECASSSSSSSAEEARCCNVTAMANNSSIPPPQQYLRMPHEDPISLSSSSSSSAAAAARFQNHQKVGTSSMLFDLDPSLQYRNKAQKVVQL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0002 501 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 114 457 IPR044800 GO:0003700
Sto9g0002 501 MobiDBLite consensus disorder prediction 1 47 - -
Sto9g0002 501 Pfam B3 DNA binding domain 156 260 IPR003340 GO:0003677
Sto9g0002 501 MobiDBLite consensus disorder prediction 14 31 - -
Sto9g0002 501 CDD B3_DNA 154 249 IPR003340 GO:0003677
Sto9g0002 501 ProSiteProfiles B3 DNA-binding domain profile. 156 261 IPR003340 GO:0003677
Sto9g0002 501 SUPERFAMILY DNA-binding pseudobarrel domain 153 262 IPR015300 -
Sto9g0002 501 SMART B3_2 156 261 IPR003340 GO:0003677
Sto9g0002 501 MobiDBLite consensus disorder prediction 60 79 - -
Sto9g0002 501 Coils Coil 11 38 - -
Sto9g0002 501 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 114 457 - -
Sto9g0002 501 MobiDBLite consensus disorder prediction 124 146 - -
Sto9g0002 501 MobiDBLite consensus disorder prediction 109 147 - -
Sto9g0002 501 Gene3D - 149 268 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0002 Sto-Chr9 44164 46233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0002 98 419 RAV Transcription Factor Family AT2G46870 46.847 5.64e-78 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto9g0002 B3 1.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0002 - - lja:Lj3g3v2520080.1 379.793