Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g0001 ATGGAGGATGGGAGTGCTAGGGTTTCAGGCTCAGTCGAGGATGACAGCTCAGTAGTAACTCGCTCCTCTCCCTCCTACTGGCTGGACGCTTGTGAGGACATTTCCTGCGATCTCATTCACTTCGATGATGGGTCTATTGTACCAGAACAGGTCGATAACAATTTGATACAGGATGGACTTGTTAATGATTTCTTCGGCGGGATTGATCACATTCTTGATAGTATTAAGAACGGTAGTGGCCTCCCTGTGGTCACCGAGAGCGATTCCATTCTTACTGGGAGTGGAGACCAAGACGGTATGCGAGCTGAAATCTCTGATCAGAAAGATTTTGTTAAGAATGGGTTGGGTGGGGAAAAACATGGTCGGACAATCGAAGCTTGTGAGCGTTCAGAAGCTGAGAGTAATGGATACGACTACAAGCTATCAATTGGCAGTGAAGAAGGAAGAACTGTAGCTGATTTTAAGGAAAATGGAGATGGTCATGCGGATGGTGAAGAGAGATTCAGCAAGAGGGCTCGGCTCGGCATTCATAAGAATGAGAGGCCTTATTCTGGCAGAGCCAGTTATCACCCCAAGGAGAGGGAGAGGTGTCCTAGTAGGAAGAGGCCCCGCGAGTGGGACGAGGCTGATAGGAAGGACAAAGATGGTGTGAGGAAAAGAGAACAGTATGGTAGTGGTAGGAGAGATGTTAGGGATAGGGATTGGAGGGATAGAGAAAGGGGTTACTGGGAGAGAGATAAGTCAGGTTCCCATGACATAGTCTTTCGCATAGGCACTTGGGAAGCTGATCGAAATCGAGAAGGAAAGTTGGCTAATGACATTAAACAGGAATGCAATGGAAAGGTCGAGAGCAAAACTGAGGAGCCTAAGGAAAGAGTTCCTGAGGAACACGCTAGAAAGTACCAGTTGGATGTACTTGAGCAGGCAAAGCAGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAGACCCTCATTGCTGTTCTTCTCATCAAAAGTATTCATGAGAGCTTGCAAAAGCAGAATAAAAAAATGCTTGCTGTATTTTTGGTTCCCAAAGTTCCACTGGTTTACCAGCAAGCAGAAGTGATTCGAGAGCGAACAGGCTACCAAGTGGGCCACTACTGCGGAGAAATGGGGCAGGACTTTTGGGATGCCCGAAGGTGGCAACGGGAATTTGAAACAAAACAGGTTCTAGTCATGACTGCTCAAATTCTTTTAAACATTCTGAGGCACAGCATAATAAAGATGGAAACAATCAATCTCCTACTTCTGGATGAATGCCATCATGCTGTGAAGAAACATCCATATTCACTGGTGATGTCCGAGTTCTATCATACAACACCCAAAGACAAGAGACCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCTAGTCAAGTGGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGTACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGACAAAgcggccagtttatgttatctTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGTTCAAGAAGAAGTAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCCAAAGAAGAGCTACGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAATTGAGAGCTATCAATTATGCTCTTGGTGAATTGGGTCAGTGGTGTGCATATAAAgtTGCACATTCGTTTCTATCAGCTTTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCCTATCTGAATAAAGTTGTCTCTCTTCTACAATGTCAACTGTCAGAGGGTGCAGTTTCTGACAAGAATGCTGGAGTTTCTGATTCTGAGTGTGGTATAGCACAGGGTGGATCTGAACCTGATGAGATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGAGCTGCTGTGGCTGATGGCAAGGTTACCCCCAAGGTGCAGGCTCTGATCAAAATACTTCTCAAGTATCAGAACACAGAAGACTTTCGTGCAATCATCTTCGTTGAGCGCGTGGTGTCTGCTTTAGTTCTTCCTAAGGTTTTTGCAGAGCTTCCATCTCTGAGTTTTGTGAAGTGTGCAAGTTTGATTGGTCACAACAATAGTCAGGAAATGAGGACCTCACAAATGCAGGATACAATTGCTAAGTTCCGTGATGGTCGAGTTACGTTGTTAGTTGCCACTAGTGTTGCTGAGGAAGGACTTGATATACGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACAGTTTTGGCATATATTCAGTCTCGAGGCCGTGCCAGAAAGCCTGGGTCAGATTACATACTGATGGTTGAGAGGGGAAATTTGTCGCATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGGACAGACCTAAGTCATCTCAAAGACACTTCAAGGTTGATTTCAGTAGATACTAGGCCAGGAACTGTTTATCAGGTGGAGTCAACTGGTGCAGTTGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTGTTGCCTGACAAAGGAAGtggggaagagagagaaaaggctGAGCAAAATGATGAAGGAGATCCACTTCCGGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGCGTGGCTGACATACTTAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAGCAACACCAAATTGCTTAATCTTTATATGTATGCTGTTAAGTGTGAAAATGTTGGCCATTCAAAGGATTCATTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAACAGGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCACGAACCATGACTACAAAGGCATCCCTTATCTTTAGAGGGTCAATAGATATCACTGAGAGTCAGTTGGCGTCCCTAAAAAGCTTTCATGTACGATTAATGAGTATTGTTCTGGATGTGGATGTTGAACCTTCCACCACTCCTTGGGATTCTGCTAAAGCATATTTATTCGTCCCAATGGTTAGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACTATAATTGAAACAGAGGCATGGAAAAATCCGCTTCAGAAAGCTCGACCAGATGTTTACCTTGGCACAAATGAGAGAACATTAGGTGGAGATAGAAGGGAATATGGATTTGGAAAATTGCGTCATGGCATGGCTTTTGGACAAAAGTCACATCCGACTTATGGAATCAGAGGAGCTGTGGCACAGTTTGATGTAGTAAAAGCTTCAGGATTGGTTCCTAATAGAGAAGCCGTGCAAGTGCAAAAGCATATTAGTAAGACTACGCAAGGGAAATTGATGATGGCAGATACCTGTGCTAATGCAGAGGATCTGGTTGGGAAGATAGTTACAGCTGCTCACTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGACTGCAGAGAACTCTTTTCCTCGGAAAGAAGGTTATCTTGGTCCTCTCGAGTACAGCTCATATGCTGATTACTACAAGcaaaaGTATGGCGTAGATTTAATTTACAAGCAGCAACCGCTTATAAGAGGGCGTGGTGTGTCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAACACATGAAGGTGAATCTGAAGAGAATCATGACAAAACTTATTATGTTTTCCTTCCTCCTGAATTGTGTCTTGTACACCCATTGCCTGGATCACTTGTTCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGTATGCTACTTGCAATTCAGCtcaaaaatatgataaattatCCTGTCCACTCTTCCAAGATCTTGGAGGCCTTGACTGCTGCCTCCTGCCAGGAGACATTCTGCTATGAAAGGGCTGAGCTTCTAGGAGATGCTTATCTGAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAGTACCCACAGAAACATGAAGGCCAGCTTACCAGGATGAGGCAACAAATGGTCAGTAACATGGTGTTATATCATTATGCATTGAGTAAAGGACTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCAAGATGGGCAGCACCAGGGGTGCTGCCTGTCTTTGATGAGGATACAAAAGATGGAGAATCATCTTTATTTGACCAGGAGGGATCAATTTCTAAGACAGAGAGGATGGATCAGCTTGCTGATGGATTTGAGGATGATGAACTGGAAGATGGTGAGCTTGAGAGTGACTCAAGTTCCTATAGAGTCCTATCCAGCAAGACACTGGCAGATGTCGTAGAAGCTCTGATTGGGGTGTATTATGTTGAAGGAGGGAAGAATGCTGCTAACCATCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGATCAATTGGAGTGTACAAGGAAACCAATTTAG 4617 0.4314 MEDGSARVSGSVEDDSSVVTRSSPSYWLDACEDISCDLIHFDDGSIVPEQVDNNLIQDGLVNDFFGGIDHILDSIKNGSGLPVVTESDSILTGSGDQDGMRAEISDQKDFVKNGLGGEKHGRTIEACERSEAESNGYDYKLSIGSEEGRTVADFKENGDGHADGEERFSKRARLGIHKNERPYSGRASYHPKERERCPSRKRPREWDEADRKDKDGVRKREQYGSGRRDVRDRDWRDRERGYWERDKSGSHDIVFRIGTWEADRNREGKLANDIKQECNGKVESKTEEPKERVPEEHARKYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLLLDECHHAVKKHPYSLVMSEFYHTTPKDKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVSDKNAGVSDSECGIAQGGSEPDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTRPGTVYQVESTGAVAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACSNTKLLNLYMYAVKCENVGHSKDSFLTQVSDFAVLFGNRLDAEVLSMSMDLFIARTMTTKASLIFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVSDKSVDPMNQIDWHLVETIIETEAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNREAVQVQKHISKTTQGKLMMADTCANAEDLVGKIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSETHEGESEENHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVHSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYHYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQEGSISKTERMDQLADGFEDDELEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDQLECTRKPI 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g0001 1538 CDD DEXHc_dicer 298 496 - -
Sto9g0001 1538 Gene3D - 691 857 IPR027417 -
Sto9g0001 1538 Pfam PAZ domain 1179 1325 IPR003100 GO:0005515
Sto9g0001 1538 CDD SF2_C_dicer 698 828 - -
Sto9g0001 1538 SMART riboneu5 1344 1529 IPR000999 GO:0004525|GO:0006396
Sto9g0001 1538 Pfam Type III restriction enzyme, res subunit 304 464 IPR006935 GO:0003677|GO:0005524|GO:0016787
Sto9g0001 1538 SUPERFAMILY RNase III domain-like 1321 1527 IPR036389 GO:0004525|GO:0006396
Sto9g0001 1538 Pfam Ribonuclease III domain 1362 1509 IPR000999 GO:0004525|GO:0006396
Sto9g0001 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 345 832 IPR027417 -
Sto9g0001 1538 SMART ultradead3 294 497 IPR014001 -
Sto9g0001 1538 MobiDBLite consensus disorder prediction 910 934 - -
Sto9g0001 1538 CDD RIBOc 1344 1527 IPR000999 GO:0004525|GO:0006396
Sto9g0001 1538 MobiDBLite consensus disorder prediction 908 934 - -
Sto9g0001 1538 PANTHER DICER-RELATED 888 1537 - -
Sto9g0001 1538 PANTHER DICER-RELATED 253 887 - -
Sto9g0001 1538 Gene3D - 292 536 IPR027417 -
Sto9g0001 1538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 482 IPR014001 -
Sto9g0001 1538 SUPERFAMILY PAZ domain 1185 1305 IPR036085 GO:0005515
Sto9g0001 1538 Gene3D paz domain 1181 1303 - -
Sto9g0001 1538 ProSiteProfiles Ribonuclease III family domain profile. 1348 1509 IPR000999 GO:0004525|GO:0006396
Sto9g0001 1538 MobiDBLite consensus disorder prediction 175 231 - -
Sto9g0001 1538 SMART PAZ_2_a_3 1168 1329 IPR003100 GO:0005515
Sto9g0001 1538 Gene3D Ribonuclease III domain 1327 1523 IPR036389 GO:0004525|GO:0006396
Sto9g0001 1538 ProSiteProfiles PAZ domain profile. 1165 1305 IPR003100 GO:0005515
Sto9g0001 1538 Pfam Helicase conserved C-terminal domain 701 818 IPR001650 -
Sto9g0001 1538 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 253 887 - -
Sto9g0001 1538 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 888 1537 - -
Sto9g0001 1538 SMART helicmild6 734 820 IPR001650 -
Sto9g0001 1538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 704 865 IPR001650 -
Sto9g0001 1538 CDD PAZ_CAF_like 1158 1307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g0001 Sto-Chr9 30 10634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g0001 717 860 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 2.00e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g0001 K11592 - gmx:100811631 1306.2