Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4711 ATGAGGAAGAGGCTCAAGGAGATTGAGGAAGAAGCTGGCGCGCTTCGCGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCATCTGGCTCTTCTGCAAGCCAAGCTGAAAAGGAGGAAGTGGATTCTCGATCAATCTATGTTGGTAATGTGAGGCATGGTTTATGTACTAGTAGATTTATGATGGAATTGGTATGGATAAGATCTATTCTTCGGTCCTTGCTTAACAGCTCTAGCAGTCTAGCTTATCAGGTTGACTATGCATGCACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGAACTGTGAACAGAGTGACAATATTGACAGACAAGTTTGGTCAACCAAAAGGATTTGCTTATGTTGAATTTGTTGAGGTTGATGCTGTTCAAAATGCTCTTCTATTGAATGAATCAGAATTGCATGGTCGACAATTAAAGGTCTCTGCCAAACGTACAAACATTCCTGGTATGAAACAATACCGTGGAAGAAGGCCAATGGGTTTACGTTCTAGAAGGCCATTCATGCCTGCTCCATTCTATCCTCCATATGGTTATGGAAGGGTTCCGAGGTATAGGCGTCCTACACGGTACAGGCCATACTAG 621 0.4348 MRKRLKEIEEEAGALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDSRSIYVGNVRHGLCTSRFMMELVWIRSILRSLLNSSSSLAYQVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPMGLRSRRPFMPAPFYPPYGYGRVPRYRRPTRYRPY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4711 206 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 81 205 - -
Sto8g4711 206 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 1 61 - -
Sto8g4711 206 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 61 - -
Sto8g4711 206 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 81 205 - -
Sto8g4711 206 Coils Coil 5 25 - -
Sto8g4711 206 MobiDBLite consensus disorder prediction 23 42 - -
Sto8g4711 206 SUPERFAMILY RNA-binding domain, RBD 89 179 IPR035979 GO:0003676
Sto8g4711 206 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 152 IPR000504 GO:0003723
Sto8g4711 206 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 158 IPR000504 GO:0003723
Sto8g4711 206 SMART rrm1_1 83 154 IPR000504 GO:0003723
Sto8g4711 206 CDD RRM_II_PABPs 88 154 - -
Sto8g4711 206 Gene3D - 42 162 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4711 Sto-Chr8 49463790 49470779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4711 88 154 Eukaryotic Initiation Factors Gene Family AT2G36660 33.803 5.82e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4711 K14396 - gmx:100527545 258.07