Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4710 ATGGAGGAGGAGCAGCAGCAGCACGAAGAGCATGAAGTGTACGGAGGAGATATTCCCGACGAGGGCGAGATGGACGCAGATTATGCAGTTGAAGAAGAAGGagtagaagaggaagaagaagaaggagaagaccgCCATGCCTCCAATCACCCAAATAAGGACTTGGAGGATATGAAGAAGAGGCTCAAGGAGATTGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCATCTGGTGCTTCTGCAAGTCAAATTGAAAAGGAGGAAGTGGATTCGAGATCAATCTATGTTGGTAATGTTGACTATGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGAACTGTTAACAGAGTGACGATATTGACAGACAAATTTGGTCAACCAAAAGGGTTTGCTTATGTTGAGTTTGTTGAGATTGATGCTGTTCAGAATgctctcctcttgaatgaatcAGAATTGCATGGTCGACAATTGAAGGTCTCTGCTAAGCGTACAAATATTCCTGGAATGAAACAGTATCGCGGAAGAAGACCTATGGGTCTACGACCTAGAATGCCTTCTCCATTCTATCCTCCATATGGTTATGGAAGGGTTCCAAGGTATAGGCGACCAATGCGGTACAGGCCATACTAG 681 0.4185 MEEEQQQHEEHEVYGGDIPDEGEMDADYAVEEEGVEEEEEEGEDRHASNHPNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGASASQIEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNIPGMKQYRGRRPMGLRPRMPSPFYPPYGYGRVPRYRRPMRYRPY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4710 226 MobiDBLite consensus disorder prediction 19 42 - -
Sto8g4710 226 MobiDBLite consensus disorder prediction 1 57 - -
Sto8g4710 226 SMART rrm1_1 106 177 IPR000504 GO:0003723
Sto8g4710 226 Gene3D - 20 187 IPR012677 -
Sto8g4710 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 181 IPR000504 GO:0003723
Sto8g4710 226 Coils Coil 52 82 - -
Sto8g4710 226 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 225 - -
Sto8g4710 226 SUPERFAMILY RNA-binding domain, RBD 95 207 IPR035979 GO:0003676
Sto8g4710 226 MobiDBLite consensus disorder prediction 1 18 - -
Sto8g4710 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
Sto8g4710 226 MobiDBLite consensus disorder prediction 43 57 - -
Sto8g4710 226 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 4 225 - -
Sto8g4710 226 CDD RRM_II_PABPs 106 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4710 Sto-Chr8 49455928 49460325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4710 106 177 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.29e-10 57.0