Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4703 ATGTCTTTAGGGTCTCCTTTGTTGTTGTTGACTATAGTTGTCTCCCTGCAAGCCATGGTTAGTGCCATTGATGGTAGTTGGTACGATGCTCATGCAACCTTCTATGGTGACATGCAAGGTGGAGAAACCATGCAAGGTGCATGTGGCTATGGTGACCTCTTCAAGCAAGGGTATGGCCTTGAGACAACCGCCCTAAGCACGGCCCTCTTCAACAACGGCCTTACATGCGGCGCGTGTTTCGAGATCATGTGCGTAAACGACCCTCAGTGGTGCATCAAGGGCGCCGGCACGATCAAAGTGACGGCCACCAACTTCTGCCCTCCCAACCATGACCAGCCAGACATCCACCATTGGTGCAACCCTCCCATGAAGCACTTTGACCTCTCCATGGCCATGTTCACCAAGATTGCCATCGACAAGGCCGGCATCGTCCCGGTTAGCTACCGGCGCGTGCCATGCGTGAAATCCGGCGGCGTCAAGTTTGAGCTCAAGGGAAACCCTAATTGGCTTCTTGTGTTGTTCTACAATGTGGCCAATGCTGGGGATGTGACAAATGCTAAGATTAAAGGGTCTAGTTCTAGTGGGTGGACTCAAATGAGTCGCAATTGGGGGCAAAATTGGCAAACTGGGACCAATTTTGTAGGGCAAAGCTTGTCGTTTCAATTGACCACTAGTGATGGCAAAACGCTGGAGTTTGATGATGTCGTTCCTGCTAGTTGGCAATTTGGACAGTCGTTTGAGGGAAATCAGAATTTCTag 759 0.5059 MSLGSPLLLLTIVVSLQAMVSAIDGSWYDAHATFYGDMQGGETMQGACGYGDLFKQGYGLETTALSTALFNNGLTCGACFEIMCVNDPQWCIKGAGTIKVTATNFCPPNHDQPDIHHWCNPPMKHFDLSMAMFTKIAIDKAGIVPVSYRRVPCVKSGGVKFELKGNPNWLLVLFYNVANAGDVTNAKIKGSSSSGWTQMSRNWGQNWQTGTNFVGQSLSFQLTTSDGKTLEFDDVVPASWQFGQSFEGNQNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4703 252 SUPERFAMILY Barwin-like endoglucanases 26 176 IPR036908 -
Sto8g4703 252 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Sto8g4703 252 Gene3D - 11 153 IPR036908 -
Sto8g4703 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 248 IPR007117 -
Sto8g4703 252 PANTHER EXPANSIN 14 249 - -
Sto8g4703 252 PANTHER EXPANSIN-A15 14 249 IPR002963 GO:0009664
Sto8g4703 252 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Sto8g4703 252 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Sto8g4703 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Sto8g4703 252 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Sto8g4703 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Sto8g4703 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Sto8g4703 252 Gene3D - 158 252 IPR036749 -
Sto8g4703 252 SUPERFAMILY PHL pollen allergen 155 248 IPR036749 -
Sto8g4703 252 Pfam Lytic transglycolase 62 148 IPR009009 -
Sto8g4703 252 Pfam Expansin C-terminal domain 159 237 IPR007117 -
Sto8g4703 252 SMART dpbb_1 62 148 IPR007112 -
Sto8g4703 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 158 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4703 Sto-Chr8 49413645 49415014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4703 12 252 Expansin Gene Family AT5G39300 61.411 4.14e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4703 - - gmx:100789595 395.971