Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4680 ATGAACAAGTACAAGTTCATAGTCCTCGCAATGATATTGATTATTCTTCTCCTCAACCTCCACAATTGCAGAGCTGCTTCTTATTCATGGAAGACCAACTTTCCCATCAACACCACCGCCGCCCGTGTCTCCGTCGACCGCCACCGCCTCGACGTCGGCGGCGACAATGACGGATCCGACACGGAATATTTGGGCCCAGAACTCTCACTACTTTCCTTTGGAGCTTCCATTTCCCACCACTCCTTGATCCCTTCTAAACCTGCAGTTGCTTTCATAATGGgcaagaagcaagaaattgATAGGAGTACCAGGTCCGTCGTAGCCTTTGGaagtgagaatgagaataatCCCCTTCTGAATAGAGAGATATCAAATACTTCTTTGGTAAAGGAGGCCGTAAATGTTGGATATTCGAGAGTGCTTTTACTGGCGAAGCCTGAAGCTGGAAGATTAATTATCGCTACCATTGCTCTGTTACTAGCATCCATATCAAATGTACTAATACCAAAATATGGTGGTCTAATTATAGACATTGTGTCAAGAGATATTAGGACACTTGAACAGCAATCTGAAGCTTTGGAGGAATTGAAgaatactataatatatatggtcctGATAGTCTTAGTTGGCTCCCTCTCCAATGCTGTTCGAGCATGGTTGTTTTCTTCAGCCAGTGAAAGGGTCGTAGCTCGCTTGAGGAAAGAACTATTTTTCCACCTAATATATCAGGAAATAGCCTTCTTTGATGTTACTCGGACTGGGGAACTCTTGAGCAGGCTTTCTGAAGACAcccaaatgattaaaaatgCTGCAACTATCAATCTCTCTGATGCACTTCGGAATCTAAGTACTGCTTTTATTGGTATTGGCTTCATGTTCTCATCATCATGGAAGCTAACAATGTTAGCTTTAGCTGTGGTTCCAATTGTTTCAATTGCTGTACGGAAATCTGGACACTATCTTCGTGAACTTTCACACAGAACTCAAGCAGTTGCTGCTGTAGCTGCATCAATTGCTGAGGAATCATTTGGGGCCATTCGTACAGTTAGGTCTTTTGCTCAGGAAAGTAAGACAGTATCAAGCTACTCAGAAAAGGTCGATGAAACCCTGAACCTTGGACTTAGACAAGCTGAAGTGGTTGGTCTATTTTCTGGAGGAGTAAATGCTGTAATCACACTAACAGTTATTCTTGTTGTCATTTATGGAGCATCCCTGGTAATTAAAGGGTCCATGACCGCTGGATCTCTAACATCATTCATCCTATATAGCCTTACAGTTGGGTTGTCAACGGCATCTTTATCAGGATTATATACAACTGCAATGAAAGCAGCAGGGGCTAGTAGAAGAGTTTTCTGGCTCCTGGATTGTTCTCATACCATACCAAGATCAGGAGACAATAGCCCTTCAGGTAGTGCTGATGGAGAAGTGGAGCTTGATGATGTTTGGTTTGCTTATCCTTCTCGCCCTAGCCATATGATACTGAAGTTGCTTGATCTGCAGGGAATAACACTACATTTAAGGCCTGGTTCAAAAGTTGCCCTTGTAGGTCCAAGTGGTGGTGGAAAGACTACAATAGCAAACTTGATTCAAAAGTTCTATGAACCACATAGGGGAAAAATTTTGCTAAATAGGGTTCTCCTCAAGGAATTATCTCATGAATATCTTCACAGAAAGGTCAGTATAGTGAGTCAGGACCCTTTTCTTTTTAACTGTTCTGTGGAGGAGAATATTGCATATGGATTCAATGGCAAACCATGCTACACAGATATAGAAACTGTGGCTAAAATGGCTAATGCTCATGAGTTCATAGAGAAGTTTCCAGAAAAATACCAGACTGTTGTTGGAGAACGTGGGTTGAGGCTATCGGGAGGCCAAAAACAAAGAATAGCAATTGCAAGAGCACTACTTGTGAATCCAAGTGTTCTATTATTGGATGAAGCCACTAGTGCTCTTGATGCGGAGAGTGAATATCTCGTTCAGGAAGCCATGGATTCTCTGATGACTGGTAGGACTGTTCTTGTCATAGCACACAGGCTCTCAACAGTCAAAACCGCAGATACTATTGCTGTTATATCAGATGGTCAAATTTCAGAAAGTGGAAGGCATGAAGAGCTACTTAGAAAGGATGGAATCTATGCACAACTGGACTTAGTGCCTGATTGA 2163 0.4119 MNKYKFIVLAMILIILLLNLHNCRAASYSWKTNFPINTTAARVSVDRHRLDVGGDNDGSDTEYLGPELSLLSFGASISHHSLIPSKPAVAFIMGKKQEIDRSTRSVVAFGSENENNPLLNREISNTSLVKEAVNVGYSRVLLLAKPEAGRLIIATIALLLASISNVLIPKYGGLIIDIVSRDIRTLEQQSEALEELKNTIIYMVLIVLVGSLSNAVRAWLFSSASERVVARLRKELFFHLIYQEIAFFDVTRTGELLSRLSEDTQMIKNAATINLSDALRNLSTAFIGIGFMFSSSWKLTMLALAVVPIVSIAVRKSGHYLRELSHRTQAVAAVAASIAEESFGAIRTVRSFAQESKTVSSYSEKVDETLNLGLRQAEVVGLFSGGVNAVITLTVILVVIYGASLVIKGSMTAGSLTSFILYSLTVGLSTASLSGLYTTAMKAAGASRRVFWLLDCSHTIPRSGDNSPSGSADGEVELDDVWFAYPSRPSHMILKLLDLQGITLHLRPGSKVALVGPSGGGKTTIANLIQKFYEPHRGKILLNRVLLKELSHEYLHRKVSIVSQDPFLFNCSVEENIAYGFNGKPCYTDIETVAKMANAHEFIEKFPEKYQTVVGERGLRLSGGQKQRIAIARALLVNPSVLLLDEATSALDAESEYLVQEAMDSLMTGRTVLVIAHRLSTVKTADTIAVISDGQISESGRHEELLRKDGIYAQLDLVPD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4680 720 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 131 715 - -
Sto8g4680 720 CDD ABC_6TM_AtABCB27_like 154 450 - -
Sto8g4680 720 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 152 442 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g4680 720 Gene3D - 469 717 IPR027417 -
Sto8g4680 720 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 476 718 IPR003439 GO:0005524
Sto8g4680 720 Coils Coil 176 199 - -
Sto8g4680 720 Pfam ABC transporter 499 649 IPR003439 GO:0005524
Sto8g4680 720 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524
Sto8g4680 720 Pfam ABC transporter transmembrane region 151 425 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto8g4680 720 SUPERFAMILY ABC transporter transmembrane region 139 455 IPR036640 GO:0005524|GO:0016021
Sto8g4680 720 SMART AAA_5 508 709 IPR003593 -
Sto8g4680 720 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 471 715 IPR027417 -
Sto8g4680 720 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 131 715 IPR039421 -
Sto8g4680 720 PIRSF ABC_prm/ATPase_B 29 717 - -
Sto8g4680 720 Gene3D ABC transporter type 1, transmembrane domain 136 463 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4680 Sto-Chr8 49231816 49240302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4680 194 715 Calmodulin-binding Proteins AT2G36910 38.606 2.32e-98 328