Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4653 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACATTCGCCAAGAGGAGAAATGGTCTTCTCAAGAAAGCCTATGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAATCGCGGAAAGCTTTATGAGTTCTGTAGCTCTtctagCATGCTGAAAACACTTGAGAGGTACCAAAAATGCAGTTATGGTGCAGTGGAAGTCAGCAAACCAGCCAAAGAGCTTGAGACCAGCTACCGTGAGTACTTGAAGCTGAAAGCGAGATTGGAATCACTTCAGAGGACCCAAAGAAACCTCCTGGGAGAAGACTTAGGTCCACTTAGCTCCAAAGAACTTGAACAGCTTGAGAGGCAGCTAGATTCCTCTCTAAAGCAAGTTAGGTCCACCAAGACTCAATACATGCTGGACCAGCTTGGTGATCTTCAAAACAAGGAGCAGATGCTGGTTGAAGCAAACAGAGCTTTGACTATGAAGCTTGAAGAAATCAATGCAAGAAATCACTATAGGCAGTCTTGGGAAGCTGGTGATCAAAGCATGCCATATGCTTCACAGAATGCAAACTCTCAGGGCTTCTTCCAGCCTTTGGAATGCAATCCTACATTGCAGATAGGTCCTGATTATAGGTACAATCCAGAGGGTTCAGATCAGATGACTGGTACAACACAAGGTCAGCAAGTGAATGGATTTATTCCTGGATGGATGCTTTGA 744 0.4449 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELETSYREYLKLKARLESLQRTQRNLLGEDLGPLSSKELEQLERQLDSSLKQVRSTKTQYMLDQLGDLQNKEQMLVEANRALTMKLEEINARNHYRQSWEAGDQSMPYASQNANSQGFFQPLECNPTLQIGPDYRYNPEGSDQMTGTTQGQQVNGFIPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4653 247 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Sto8g4653 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto8g4653 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 234 - -
Sto8g4653 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 Coils Coil 84 114 - -
Sto8g4653 247 MobiDBLite consensus disorder prediction 214 235 - -
Sto8g4653 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Sto8g4653 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Sto8g4653 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto8g4653 247 PANTHER MADS BOX PROTEIN 1 234 - -
Sto8g4653 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto8g4653 247 Coils Coil 124 144 - -
Sto8g4653 247 Coils Coil 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4653 Sto-Chr8 49005337 49011264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4653 1 247 MADS-box Gene Family AT5G15800 75.191 6.51e-126 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto8g4653 K-box 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4653 K09264 - gmx:100785322 439.499