Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4651 ATGGGAAGAGGAAGGGTTGAGCTGAGAAGAATAGAGAACAAGATAAGCAGACAAGTGACATTCTCAAAGAGAAGAAATGGACTTTTCAAGAAAGCCAATGAAATCTCTGTGCTTTGTGATGCTCAGGTTGCTTTGATTATCTTCTCCACCAAAGGCAAACTCTTTGAGTATTCTTCTGATCCAtgCATTGATGGCATCCTGGAACGATATGAGAGACAAGCACATACCGAACAACTTGCTCAAACTAACAATGAATCGCAGGGAAACTTGTCCTTGGAATACTTCAAGCTTACCACTAAAGTTGAAGTCTTGGAGAAGAACATAAGgaactATGTGGGACAAGATCTGGATATGTTGAGTTCGAGAGAGCTTCAGAACTTAGAGCATCAGATAGACACAGCTCTAAAGCGTGTTCGAACAAGAAagGACACAAGAACTTTACTTTGA 447 0.3982 MGRGRVELRRIENKISRQVTFSKRRNGLFKKANEISVLCDAQVALIIFSTKGKLFEYSSDPCIDGILERYERQAHTEQLAQTNNESQGNLSLEYFKLTTKVEVLEKNIRNYVGQDLDMLSSRELQNLEHQIDTALKRVRTRKDTRTLL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4651 148 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Sto8g4651 148 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Sto8g4651 148 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto8g4651 148 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 143 - -
Sto8g4651 148 Pfam K-box region 84 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto8g4651 148 ProSiteProfiles K-box domain profile. 87 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto8g4651 148 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g4651 148 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g4651 148 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g4651 148 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g4651 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto8g4651 148 PANTHER MADS BOX PROTEIN 1 143 - -
Sto8g4651 148 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Sto8g4651 148 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4651 Sto-Chr8 48986438 48991753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4651 1 143 MADS-box Gene Family AT1G26310 60.959 5.07e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto8g4651 K-box 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4651 K09264 - gmx:100786580 209.149