Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4648 ATGAGGCGTGAAGTGCATTCCATTCCTTCATCTATACAGGGGGCAGCATCAATGAATTCTACAGCATCACTGGATAATTCTTTATCTGACATGTATCGTTCTCCTCCACGGCCCTTGCCTTATGATGCAGATCCCAGGTATTTCCTCTCACAACGTGATGGACTAGTCTCGAGGCGTGAGAAGGGCTCAAGCCATTTAAATGAGGAATCACAACCTCTAAGAAGTGATCTAGATGTGGATTCAGACTCTTTAAATATAGACAAATGGAATGAAAGTGCATGTGAAAATGGATCAAAGGAATACCGTTCTAAGTCCTCACTTAGACTCTCATCAGGAAAATATACAACTGGAGCTGGGCTGGTCTCTGCATTGCCGGAAGAAGAGGATGTTTGTCCAACATGTCTTGAAGAATATACTGAAGAGAACCCAAAGATAATGACAAAATGCTCTCACCATTTTCATCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTCTGCGGGAAGCCTGTGGCCTCTTGA 534 0.4345 MRREVHSIPSSIQGAASMNSTASLDNSLSDMYRSPPRPLPYDADPRYFLSQRDGLVSRREKGSSHLNEESQPLRSDLDVDSDSLNIDKWNESACENGSKEYRSKSSLRLSSGKYTTGAGLVSALPEEEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKPVAS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4648 177 SUPERFAMILY RING/U-box 125 175 - -
Sto8g4648 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 177 IPR013083 -
Sto8g4648 177 ProSiteProfiles Zinc finger RING-type profile. 131 171 IPR001841 -
Sto8g4648 177 SMART ring_2 131 171 IPR001841 -
Sto8g4648 177 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 2 174 - -
Sto8g4648 177 Pfam RING-H2 zinc finger domain 128 171 IPR024766 GO:0008270
Sto8g4648 177 MobiDBLite consensus disorder prediction 1 81 - -
Sto8g4648 177 MobiDBLite consensus disorder prediction 53 81 - -
Sto8g4648 177 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 174 - -
Sto8g4648 177 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4648 Sto-Chr8 48971238 48972671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4648 2 173 C3H Transcription Factor Family AT5G15790 59.777 9.99e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4648 - - gmx:100777068 280.026