Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4641 ATGGCTAGGTCTGCGAAAGGTCAGCATCACGAattggaagatgaagatgaagatgaagatcaCTTGACTGGATATGGCTCTTCTTCTCACAAaggttcacctcacctcaccGTGGACGAAGCCACCAGGGAGCAGCGGGTGAATGCACATCGTTCAAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAGATTAATGAAAGATTTCAGATCCTGAGAGATCTCATACCTCAAAATGATCAGAAAAGAGATAAGGCTTCTTTCTTGTTGGAGGTTATTGAGTATATTCAATTTTTGCAGGAGAAGGTACAAATATATGAGCAGTCTTACCAAGGGTGGAATCAGGAGCCGATGAAATTAATTCCTTGGAGAAATCAACGTGGGCCAGCAGAAAATATTACACATCCTTCTCAAGCTATACAGAATGGTACTGGTCATGAGAACAATGATGTCTCTCCATCACTAACCATAAATGCACAGAATACAATAGAATCTGACTTGTCATCAACAGTTATTCAGAAGGCCAGTCCCCCTGGTTTAGCTTCTGAAGCAGTTCCCTTGAGCATGCCAATGCCGTTGGACATGTTTGACCCGACAGTGAGCAGTGGTATGCCAACCCAACATTTGCATGAAGCAGTATCTAATGCTGAGAACATGCTTTCCCATACTCAGCCTCAAGTGTGTCTTGGTAGACCTAAGGATGGCACTTGTGATTTTCCAGATAGTACATTGAAGGAACCGGAGGAGCTGACATATGAAAGTGAATCAGTTAGCATCTCAAGTGCCTATTCTCAGGGAATATTGAATACTTTTACACAAGCGCTGCGGTCTTCAGGTGTAGATTTATCCCAGGCCAATGTTTCAGTGGTAATTGATGTTGGGAGACGATCAATTGCATCCACATCTAGCTCAAAGGTTTGTAAAATTTTTGGAGAGAACCAATTTGTGAACAACAGAGGCATGCCATGTTCAGGAGTTGATTACTGCAGTGAGGATTCCGAGCAATCTTACAAGAGGCTGAGAACAGAAACAAGCTAG 1038 0.4114 MARSAKGQHHELEDEDEDEDHLTGYGSSSHKGSPHLTVDEATREQRVNAHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKVQIYEQSYQGWNQEPMKLIPWRNQRGPAENITHPSQAIQNGTGHENNDVSPSLTINAQNTIESDLSSTVIQKASPPGLASEAVPLSMPMPLDMFDPTVSSGMPTQHLHEAVSNAENMLSHTQPQVCLGRPKDGTCDFPDSTLKEPEELTYESESVSISSAYSQGILNTFTQALRSSGVDLSQANVSVVIDVGRRSIASTSSSKVCKIFGENQFVNNRGMPCSGVDYCSEDSEQSYKRLRTETS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4641 345 PANTHER TRANSCRIPTION FACTOR BIM3 1 344 - -
Sto8g4641 345 CDD bHLH_AtBIM_like 48 124 - -
Sto8g4641 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 126 IPR036638 GO:0046983
Sto8g4641 345 MobiDBLite consensus disorder prediction 1 63 - -
Sto8g4641 345 MobiDBLite consensus disorder prediction 36 63 - -
Sto8g4641 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Sto8g4641 345 SMART finulus 55 105 IPR011598 GO:0046983
Sto8g4641 345 Coils Coil 96 116 - -
Sto8g4641 345 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Sto8g4641 345 Gene3D - 47 120 IPR036638 GO:0046983
Sto8g4641 345 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 344 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4641 Sto-Chr8 48897353 48903975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4641 3 297 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.391 2.52e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g4641 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4641 - - gmx:100791730 399.053