Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4638 ATGGGGTCAATTCAACTTGAGCTTGGGTTAAGTTCAAAACAAACCTGTATTCCCAAAAGCACTGTGAACTTTTTAAATGATCTGAAAAACTTGGATTATTGTGTGCCTGAAAAATTGTCAAAGTTGGAAGCCTATTTGCAAAAGCACAAGGAGGAATTTTTAAGGCTTGAACCATTTCAACAAGTGTTCCCTGTATGTGTGGAGCTCCTCAAAGATTCAATCGAAATTTTGCAAGATGAGATAATGTTATTAGGGGAGTCTATGCCCACAAAGGATCTGATGAACTCATTAGCCTTTCAAGCCAACGACTCTAAGCAAAAACAACCAGTGGTAGCAGAATATGACGAACCAAAAAATCACTTGCCATCTAGTTATTATGGTGAAAATATAGAGAAGGAGATAATGGAAGAGTCTTCAATTACACCAAATGCAAAAATCCCAAATGTTGAATTTACCAATATTTGCCATTATGGTCCAAACTTAAGGGTTGATGATTATTTGGACCATCCTACTCCACAAATTTCAGAACCAATTATGAGAGGCAATAGGATAACTTGGTCTCCGGAGCTGCATGCAAAATTTCTGGAGGCCTTGAATGCTAATGGAGGGCCACAAGCGGCTAGACCAAAGCAAATAAAGGAGTTTATGAAAGTTGATGGACTAACCAATGAACAGATAAAGAGCCATCTACAGAAATATAGGCTTCAACTGAGGGCACTTCAAACACAGAATCCCACAAATATGGTTGATCATGTGGAGTTTCAGAATATGCAAAGGCAACATATGTTTGGTGGGACTGGTAGGGACAATGTTATTGGAATGCCAATAACTTCTCCATATGCCTTCCTTTTACCAAATGGACAAATAGCAACGGAAAATAATGCTGTTGCTATTGCTACTGCTACTGCTACTGCTGCTGCTAGCCTGCCTAGCCATATGCAAATAGGAGATGAAGTTGGAAGCAACTATTGCTTTGACAACAACATAAGGCAACATGATGGATCTCAAGCTGCTTTTATGTATAGAAAATACATATAA 1038 0.3863 MGSIQLELGLSSKQTCIPKSTVNFLNDLKNLDYCVPEKLSKLEAYLQKHKEEFLRLEPFQQVFPVCVELLKDSIEILQDEIMLLGESMPTKDLMNSLAFQANDSKQKQPVVAEYDEPKNHLPSSYYGENIEKEIMEESSITPNAKIPNVEFTNICHYGPNLRVDDYLDHPTPQISEPIMRGNRITWSPELHAKFLEALNANGGPQAARPKQIKEFMKVDGLTNEQIKSHLQKYRLQLRALQTQNPTNMVDHVEFQNMQRQHMFGGTGRDNVIGMPITSPYAFLLPNGQIATENNAVAIATATATAAASLPSHMQIGDEVGSNYCFDNNIRQHDGSQAAFMYRKYI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4638 345 Pfam Myb-like DNA-binding domain 185 234 IPR001005 -
Sto8g4638 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR EFM-LIKE ISOFORM X1 4 238 - -
Sto8g4638 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 238 IPR017930 -
Sto8g4638 345 Gene3D - 182 238 - -
Sto8g4638 345 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 183 236 IPR006447 GO:0003677
Sto8g4638 345 SUPERFAMILY Homeodomain-like 180 238 IPR009057 -
Sto8g4638 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 238 IPR044787 GO:0003700|GO:0006355
Sto8g4638 345 Coils Coil 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4638 Sto-Chr8 48876395 48881452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4638 180 265 G2-like Transcription Factor Family AT1G13300 52.273 2.57e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto8g4638 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4638 - - tcc:18601775 139.813