Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4623 ATGGAGTCTGTGGTGGCTACAGTGAGTGGTTACAATGGCTTAGAGCGATTCAACCTCATCAAGTTAATTTCACATGCAGGTGCAAATTATGTTGGCGCGATGTCAaaatcaatcacacacttgATTTGTTGGCAATTCGAAGGCAAGAAATATAATCTTGCACGGCAGTTCAAAACAGTTATTGTAAACCACCAATGGATTGAAGATTGCATAAAGCTTGGAACTCGTGTTCCAGAGGAATCTTATACAATAAAAAGTGGACAAGAAGTAGGGCCATTATTGCTGGAGGTTCCAGTCACTGTTCAGGCGAGTACCTTAACTAAGAATAAAGTGCTTAGTCACAGATCAGATGACATTGGCTCCAAAAAACAAATAACCGAGTTCAGTTCCTGGGCTTCTAGAAATTCTGTTTGGGAAGAttcttatttaataaataagCATCAGGGGACAACAACAAATTCTTCTAGAAAGTTAAGGAAAGCAAAAAGAAAGATCTCTGATAGTAATGGAGTGGCTACTATCTCTGGTCGTTCTCGTCAAAGAAGAAGGCTTGTGAAAAACAACGTTCATGAAGTGGTGTTGGATCCTTTACTTGATTTGAACCCTGAGGACTACCTTAGCAGAACCGATGGAATACATACTGATGCTGCAGCTTCCTCTAGCCTAGCTGGTGGTGTctctaaagataatattttagaaaatagaGAAGGATCAGATATTGGGTCATATAATCAAAATGGAACTAGCAATGGAGCTTCAAATGCCATTGAACATATCAAGGATTCAAATTATTTATCCACTGCAAGAATTTCAACTATGTATACAGAAGATGCCTTGCCTACTATAGAGCAAACATCAgcagatgaatgttttgaaaatttagcAGATGGTGGTCAGCCTGATCACGGTGGTGACTTACCTACATCAGAGTTGTCATGTGTAATTTGTTTGACAGAGTTCAGCTCAACAAGGGGAGTTTTGCCATGTGGACATCGGTTTTGTTATTCATGCATTCAGACCTGGGTTGATCACAGGACTACAATGGGAAAATTTTCAACTTGCCCCTTGTGCAAGTCAAGTTTTGACAGCATAATTAAATATGAGGATGCAGCTACCGATCAAAAAGTATACTCCCAAACAATCCCTTGTGGCCTTGCAAACTCAGATATTATCTTCCTTATGGATCGAGAACCACAAAATTATAGTTCTGAGTCCTCACAAGTTGGTGCTTGTGTTGTTTGTCGGGGGCGGGAACCTCTGGATCTACTCTTGAGTTGCCATCTTTGCGATATTCGAAAAATCCACTCCTATTGCTTGGATCCATATTTAGTGCCATGGACATGCAGTCACTGCAAGGATCTTCAGATGCTTTACCATAATCATTAA 1386 0.3838 MESVVATVSGYNGLERFNLIKLISHAGANYVGAMSKSITHLICWQFEGKKYNLARQFKTVIVNHQWIEDCIKLGTRVPEESYTIKSGQEVGPLLLEVPVTVQASTLTKNKVLSHRSDDIGSKKQITEFSSWASRNSVWEDSYLINKHQGTTTNSSRKLRKAKRKISDSNGVATISGRSRQRRRLVKNNVHEVVLDPLLDLNPEDYLSRTDGIHTDAAASSSLAGGVSKDNILENREGSDIGSYNQNGTSNGASNAIEHIKDSNYLSTARISTMYTEDALPTIEQTSADECFENLADGGQPDHGGDLPTSELSCVICLTEFSSTRGVLPCGHRFCYSCIQTWVDHRTTMGKFSTCPLCKSSFDSIIKYEDAATDQKVYSQTIPCGLANSDIIFLMDREPQNYSSESSQVGACVVCRGREPLDLLLSCHLCDIRKIHSYCLDPYLVPWTCSHCKDLQMLYHNH 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4623 461 SMART ring_2 313 357 IPR001841 -
Sto8g4623 461 SUPERFAMILY BRCT domain 1 85 IPR036420 -
Sto8g4623 461 SUPERFAMILY RING/U-box 309 365 - -
Sto8g4623 461 Pfam Ring finger domain 312 358 IPR001841 -
Sto8g4623 461 ProSitePatterns Zinc finger RING-type signature. 329 338 IPR017907 -
Sto8g4623 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 377 IPR013083 -
Sto8g4623 461 ProSiteProfiles Zinc finger RING-type profile. 313 358 IPR001841 -
Sto8g4623 461 SUPERFAMILY FYVE/PHD zinc finger 400 453 IPR011011 -
Sto8g4623 461 CDD RING-HC 313 357 - -
Sto8g4623 461 Pfam twin BRCT domain 4 66 IPR001357 -
Sto8g4623 461 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Sto8g4623 461 PANTHER F5A8.9 PROTEIN 1 459 - -
Sto8g4623 461 SMART BRCT_7 1 74 IPR001357 -
Sto8g4623 461 Gene3D BRCT domain 1 89 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4623 Sto-Chr8 48767654 48771209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4623 38 90 Core DNA Replication Machinery Family AT4G02110 51.852 4.16e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4623 - - vra:106765083 536.184