LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g4611	ATGAATGCAATTGTGGCATGGAAAGCAGAAAAactgtttctttctctctttcctaCTCTGGAAAATCATCCTGCAAGTGCTTTACTCTCTCCTAAAGGAGTAAACTTTGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTGGTGGATCCTCATGGTGTTTTGGATAATTGGGATGGAGATGCTGTTGATCCTTGTAGTTGGACTATGGTCACTTGTTCTTCAGACAACCTTGTTATTGGTTTGGGAACTCCCAGTCAAAACTTATCTGGTACTCTATCTCCCACCATTGGAAACCTAACAAATCTTCAGATAGTgttGCTTCAGAATAATAACATAAGTGGTTCAATTCCTTCAGAGTTGGGAAAGCTTTCTATGCTTCAAACTCTTGATCTCTCTAACAACTTCTTCAATGGGGAAATTCCTGCCTCTTTAGGTCACTTGAGAAAGCTCCAATACTTgAGGCTCAATAATAACAGTCTTTCTGGAGAGTGTCCAGAGTCATTGGCTAACATGTCACAACTTGCTTTTCTTGACTTGTCCTTCAACAATCTGAGTGATCCAGTGCCCAGAATTTTGGCCAAATCATTCAAcaTAGTTGGAAACCCCTTGATCTGCAATACAGGCAAGGAAGAAAACTGTCATGGAATGACACTGATGCCTATGTCCATGAACTTAAACAATACAGAggATGCTAAATCTTCAGGCAGACAAAAAACACACAAAATGGCCATTGCCTTTGGCTTGAGCCTAGGATGTCTCTGCCTCATAGTACTTGGTTTTGGACTATTTCTATTGTGGAGGCATAAGCATAATCAACAAGCATTCTTTGATGTCAAAGACCGGCATCACGAAGAAGTGTACCTAGGAAATTTGAAGAGGTTTCAATTCAGAGAACTTCAGGTTGCAACAAAAAACTTCAGCAACAAAAACATTCTAGGAAAAGGAGGGTTTGGTCAAGTGTACAAAGGAGTTCTTACAGATGGGACTTTTGTGGCTGTGAAGAGGCTTAGGGATGGAAATGCCATTGGAGGAGAAATTCAGTTTCAGACAGAAGTTGAAATGATCAGTTTGGCAGTGCATAGAAACCTCCTTAGACTCTATGGTTTCTGTATGACACCCTCTGAAAGGCTTCTGGTTTATCCATACATGTCTAATGGTAGTGTCGCTTCTCGTCTCAAGGGAAAGCCAGTGTTGGATTGGGGAACAAGGAAGCAAATAGCCTTAGGAGCAGCAAGAGGATTACTATACCTTCATGAGCAGTGTGACCCAAAGATAATTCACAGAGATGTGAAAGCAGCAAATATACTGCTTGATGACTATTGTGAGGCAGTTGTGGGAGATTTTGGGTTAGCCAAGCTTTTGGACCACCAAGACTCTCATGTGACCACCGCTGTTAGAGGCACTGTCGGACACATTGCCCCGGAATACCTTTCCACAGGGCAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGGATTCTTCTTCTTGAATTGATCACTGGCCAAAGGGCTCTTGAGTTTGGGAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAGGAGAAGAAGCTAGAATTGCTTGTGGACAAAGATCTAAAGAACAACTATGACAGGATTGAACTAGAAGAAATGGTTCAAGTAGCACTTTTATGTACTCAGTATCTTCCTGGACACAGACCTAAGATGTCTGAAGTAGTAAGAATGCTTGAAGGTGATGGATTGGCAGAtagatgggaagcttctcaaagaagaaataataataatgacacAACAAAATGCAGCAAAACCCATGAATTCTCTTCATCAGATCGTTATTCTGATCTCACTGATGATTCTTCTTTGCTTGTTCAGGACATGGAACTTTCAGGTCCAAGGTGA	1899	0.3992	MNAIVAWKAEKLFLSLFPTLENHPASALLSPKGVNFEVQALMGIKASLVDPHGVLDNWDGDAVDPCSWTMVTCSSDNLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNISGSIPSELGKLSMLQTLDLSNNFFNGEIPASLGHLRKLQYLRLNNNSLSGECPESLANMSQLAFLDLSFNNLSDPVPRILAKSFNIVGNPLICNTGKEENCHGMTLMPMSMNLNNTEDAKSSGRQKTHKMAIAFGLSLGCLCLIVLGFGLFLLWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQVATKNFSNKNILGKGGFGQVYKGVLTDGTFVAVKRLRDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPSERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLADRWEASQRRNNNNDTTKCSKTHEFSSSDRYSDLTDDSSLLVQDMELSGPR	632

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g4611	632	Gene3D	Transferase(Phosphotransferase) domain 1	384	596	-	-
	Sto8g4611	632	PANTHER	PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1	24	632	-	-
	Sto8g4611	632	ProSiteProfiles	Protein kinase domain profile.	307	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto8g4611	632	ProSitePatterns	Protein kinases ATP-binding region signature.	313	335	IPR017441	GO:0005524
	Sto8g4611	632	Pfam	Leucine rich repeat N-terminal domain	37	74	IPR013210	-
	Sto8g4611	632	Gene3D	Phosphorylase Kinase; domain 1	276	383	-	-
	Sto8g4611	632	Pfam	Leucine rich repeat	127	185	IPR001611	GO:0005515
	Sto8g4611	632	SMART	serkin_6	307	562	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto8g4611	632	MobiDBLite	consensus disorder prediction	587	632	-	-
	Sto8g4611	632	Gene3D	Ribonuclease Inhibitor	34	216	IPR032675	-
	Sto8g4611	632	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	24	632	-	-
	Sto8g4611	632	Pfam	Protein kinase domain	308	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto8g4611	632	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	426	438	IPR008271	GO:0004672\|GO:0006468
	Sto8g4611	632	SUPERFAMILY	Protein kinase-like (PK-like)	284	577	IPR011009	-
	Sto8g4611	632	SMART	LRR_typ_2	172	195	IPR003591	-
	Sto8g4611	632	SMART	LRR_typ_2	100	124	IPR003591	-
	Sto8g4611	632	SMART	LRR_typ_2	148	171	IPR003591	-
	Sto8g4611	632	SUPERFAMILY	L domain-like	37	199	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g4611	Sto-Chr8	48650696	48655512	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g4611	27	632	Receptor kinase-like Gene Family	AT5G16000	79.542	0.0	993

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Sto8g4611		Pkinase	2.1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g4611	-		-	gmx:100798412	1091.64