Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4579 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCAGTGTTTCCAAGTATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATGCATATGTAGGTGATGAGGCACAATCTAAGCGTGGTATTCTGACTCTGAAGTACCCCATTGAGCATGGAATTGTTAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTACAATGAGCTTCGAGTTGCCCCAGAAGAACATCCCGTTCTCCTAACTGAGGCTCCTCTTAATCCCAAGGCTAACCGTGAGAAGATGacccaaatcatgtttgagaCTTTTAATACCCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCTAGTGGTCGTACTACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCATACAGTTCCTATCTATGAGGGTTATGCCCTCCCTCATGCCATTCTTCGTCTTGACCTGGCTGGTCGCGATCTCACTGAATACTTGATGAAAATTTTGACTGAACGTGGGTATTCTTTCACCACCTCAGCAGAGCGTGAAATTGTGAGGGATGTGAAGGAAAAGCTGGCTTACATTGCCCTTGACTATGAACAAGAGCTAGAGATTGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTACGAGTTGCCTGATGGGCAGGTCATAACTATTGGTGCTGAGCGCTTCAGATGTCCAGAGGTTCTGTACCAACCATCTTTGATTGGAATGGAAGCAGCAGGCATTCATGAGACAACATATAACTCCATTATGAAGTGCGATGTTGATATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCCGGAGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAGATCTCTGCATTGGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCCATTTTGGCATCTCTTAGCACCTTCCAACAGAGTATGACGAATCTGGACCATCAATTGTGCATAGAAAATGCTTCTAAATTTGTGATTACAGGGTATGATGATTCCTCTGGAAGAAGTGCACCTTTTGAATGTAGCTTTGTTGTCCTTTCATATTCTCATGTTGGAGTGATGACTGAGAAGGCGAGGATTTGA 1230 0.4472 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELEIAKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQSMTNLDHQLCIENASKFVITGYDDSSGRSAPFECSFVVLSYSHVGVMTEKARI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4579 409 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sto8g4579 409 SUPERFAMILY Actin-like ATPase domain 149 358 IPR043129 -
Sto8g4579 409 SMART actin_3 7 372 IPR004000 -
Sto8g4579 409 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sto8g4579 409 PANTHER ACTIN 1 364 IPR004000 -
Sto8g4579 409 PANTHER - 1 364 - -
Sto8g4579 409 Pfam Actin 5 357 IPR004000 -
Sto8g4579 409 Gene3D Actin; Chain A, domain 4 182 273 - -
Sto8g4579 409 Gene3D - 10 358 - -
Sto8g4579 409 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sto8g4579 409 Gene3D - 140 340 - -
Sto8g4579 409 PRINTS Actin signature 28 37 IPR004000 -
Sto8g4579 409 PRINTS Actin signature 51 62 IPR004000 -
Sto8g4579 409 PRINTS Actin signature 63 85 IPR004000 -
Sto8g4579 409 PRINTS Actin signature 117 130 IPR004000 -
Sto8g4579 409 PRINTS Actin signature 142 161 IPR004000 -
Sto8g4579 409 PRINTS Actin signature 238 254 IPR004000 -
Sto8g4579 409 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4579 Sto-Chr8 48358738 48360518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4579 1 356 Cytoskeleton Gene Families AT3G12110 96.910 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4579 K10355 - oeu:111397366 700.664