LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g4569	ATGGCTTTACAAAACATTGGTGCTCAAAATAGTGATGATGCCTTCTATAGATATAAGATGCCCAAAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAACATAGTGAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCCTCTTACACAACAAAGTATTTTGGTTGTGAGCTTGGAGCTCAATCTAAATTTGATGAGAAAAGTGGGACTTCTCATGTTAATGGGGCACATGATACTTCGAAGCTTGCTGGCCTTCTTGAGaacttcattaaaaaatatgtccagTGTTATGGTTGTGGGAACCCTGAAACTGAGATCCTGATCACAAAGAATCAAATGATCCAGCTGAAGTGTGCTGCTTGTGGTTTTGTGTCTGATGTTGATATGAGAGACAAGCTGACTACTTTTATCATAAAGAACCCTCCTGAACCGAAAAAAGGGTCTAAAGACAAGAAGGCCATGAGAAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCAGCAGATGAGGAGcagaaaaaattgaagaaagatGTTAAGAAGAAGGGCTCTTCCTCTTCCAAGGATGGCACCACAAAAACCAACTCTTCAAAAAAGAAATCCGGTGGCTCTGATGAAGACCGTGCTTCACCCACTCACAATCAAATTTCCAATGAGGcacatgaagaagaagatgatgatgatgctgatGATGTCCAATGGCAAACAGATACATCACTAGAGGCTGCTCGCCAACGCATTCAAGAACAGTTAAATACTGTGACAGCTGATATGGTCATGCTAGCCACAGATGAGCCAGAGAAGAAGGCAAAAGCAGCAAATAAGATGAATGCTCTGGTTGAGGCCCTGTTTGACAGTGTCGAAAAAGGTTTTGCCAAAGAAGCTGCCAAGAAGAAGAGTTACCTAGCTGCTGCTTCCAGTTCCAATGCTTTGAAGGAGGTTGCCCTTGTTCTGAAGGCACTCTATGATAATCAGAATCAGAGGAAGAATAATGTGTTCGTTCAAGTTGCTTGTTTCGCAATCATGCTGAAGCAGTTGACAGAAGTACTTTATCTTCTGCTCAAGGGGTTGATGGAGGAGTGTATTGATAGGAGGGTTGtgcatattttattttgccAGTATATGGCTCTTTTTCAAACTTTGCTCGCGTTGAATTTGGTTTTGATAAGTGGTACTAAGTTCAGTTTGCATGATGTATTTGACACATTAATAGTGGATGATAAATGCATTGTTAAAGGAAGCTCGAAGTTTCAGGAAGAAAATTTCaaacgcaaaaaaaaaaagggtaaaaaaTTCAtagcatccctccaatcatATAGAGAAGAGAGTGTTGAGAAATTGTAG	1359	0.3731	MALQNIGAQNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKSGTSHVNGAHDTSKLAGLLENFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEPKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKDVKKKGSSSSKDGTTKTNSSKKKSGGSDEDRASPTHNQISNEAHEEEDDDDADDVQWQTDTSLEAARQRIQEQLNTVTADMVMLATDEPEKKAKAANKMNALVEALFDSVEKGFAKEAAKKKSYLAAASSSNALKEVALVLKALYDNQNQRKNNVFVQVACFAIMLKQLTEVLYLLLKGLMEECIDRRVVHILFCQYMALFQTLLALNLVLISGTKFSLHDVFDTLIVDDKCIVKGSSKFQEENFKRKKKKGKKFIASLQSYREESVEKL	452

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g4569	452	Pfam	Domain found in IF2B/IF5	10	127	IPR002735	GO:0003743\|GO:0006413
	Sto8g4569	452	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED	275	311	-	-
	Sto8g4569	452	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED	1	275	-	-
	Sto8g4569	452	SUPERFAMILY	Translation initiation factor 2 beta, aIF2beta, N-terminal domain	10	101	IPR016189	GO:0003743\|GO:0006413
	Sto8g4569	452	MobiDBLite	consensus disorder prediction	143	236	-	-
	Sto8g4569	452	SUPERFAMILY	Zinc-binding domain of translation initiation factor 2 beta	98	133	IPR016190	GO:0003743\|GO:0006413
	Sto8g4569	452	SMART	eIF2Bneu4	15	129	IPR002735	GO:0003743\|GO:0006413
	Sto8g4569	452	MobiDBLite	consensus disorder prediction	148	212	-	-
	Sto8g4569	452	Gene3D	-	2	104	-	-
	Sto8g4569	452	Gene3D	-	105	145	-	-
	Sto8g4569	452	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR	1	275	IPR045196	GO:0003743\|GO:0006413
	Sto8g4569	452	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR	275	311	IPR045196	GO:0003743\|GO:0006413
	Sto8g4569	452	Coils	Coil	159	179	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g4569	Sto-Chr8	48257871	48266911	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g4569	1	328	Eukaryotic Initiation Factors Gene Family	AT1G77840	58.500	4.02e-137	399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g4569	K03262		-	gmx:100777906	442.195