Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4564 ATGGCTTCCAAGCCCTCGCCGattcccaaaacccaaaccctaaactccctTCACTTGTTCCTCACTGCTCACCAATCCCTACATTCCCCTCCCCTTCCCCCTCTTCCCTCGTCTCTCCCCCAATCCAAACTCATCCCCAACACCCGCTTCCTCATCGACGCATTCCGCCACGCCGGCGATTACTCTGTCTCCTActtcctttcccatttccactccgATCACTACACTGGTCTCACCCCTAATTGGTCCAAAGGCGTTATTTTTTGCTCAAACACCACTTCTCGCCTTCTCGTTCAAGTCCTCAAGGTTCCTTCCAAGTTCGTAGTCCCCCTACGGCTTTGTGATCCGGTTGAGATTGATGGCTGTGAAATCACCCTCGTTGATGCTAATCATTGCCCTGGTGCGGTGCAGTTCTTGTTCAAGATTCCGGGTGCTGGTGGCAAGTGTGAGAGGTATGTTCACACGGGTGATTTTCGGTTTTCTAAAGCAATGAAATCGGAGCCTCTGCTTGATGCATTTGTGGGTGCGGATGCTGTATTTTTGGACACAACGTATTGTCACCCTAAGTTTCAGTTCCCTACCCAAGAAGAGTCTGTCGCTTATATAGTGGATGTAGTAGGGACGAGTGGAGGTGAATATGATTGTTCCAATAGAGATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGCAAAGAGAAGATTCTTCTTGAACTTGCTCGTAGGCTTAAACGTAAAGTGCACGTGGACACTAGAAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGAAAAGTGGTGAATTCACAGAGGATGACTCTGAAACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGTGAGACGTGGCCATACTTTCGgccaaattttgttaaaatgaAGGAGATTATGACTGAGAGAGGGTACTCTAAAGTTGTAGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCACAATAAATTTACTGTGAAGTCCAAAGATTCGTTTCAGATTCATCTTGTGCCATATAGCGAGCATTCAAACTATGATGAGCTCAGGGAATAtgtaaagtttttgaaaccaaaGCGTGTAGTTCCTACAGTGGGTGTAGATGTTGAGAAAACTGACAGTAGACATGCGGCCAAAATGATGAAACATTTTGCTGGATTGGTTGATGAGACAGCCAACAAGCAGGAATTTCTAAGGGGTTTTCATTGTGCATCCGGTGAAGTAGGTTTGAAGTTTAAAAAGGATGGCAGTGATGCCCTCAAGCCAGGGCAGAATGTGGAGACAAAAGTGGAATTATCTGACAAACAAGGTGATAGAAGTAATAATCCAGATATTGTTTTAAATGATTCTTCTTCTATGAGAGAACCTGGCCCACGAGATCCTAATGAGGAAAAAGAGAAACTAATGCAAGAGATTCGTTGTTTTTTGCCTACATGGGTGACTCAGAAACAAGTGTTGGAGCTCATTAGCAACTCAGGGAGCAATGTGGTTGAAGCTATTTCTAATTTCTATGAACGTGAAACTGAGTTTCATGAGGAAGTGTTTTCTTGTCAAACTTCTGTCTCTGCATCTGCGTGCTTATCAAATAGTGATTCACTTTCAAAACCTCCTGTTGCACCTGTTGTTACGGACAACACATGCAAAAGTGTTGACATTTTTCCAAGTCAAAACTCTAAGCTATCCACCCAAAGACATTCTGTAGCAAGTAGTGTTCTTCCTGCTAAAAGGAAGAGAAatagtgaaagaaaaataaacaagaaAGTAAAAGTTGATGCAAAATCAGATTCAAGCGGGCCCAAGCAATCAACCATAACCAAATTCTTCACTAAAGTCTTGCCTGGGGTTACTCAATCTGGTAATTCTGGATCTAATTCTGATCAAAGCCCCAGAGTTGAAGACTCGCTGCTGTCTGATGTTGAAAAATTGTACAAGGATGAGATTGATCAGTTTATGCAGATAATTAATGGAAATgagtcattaaaaaattatgctGCTACTACAATTGAGAAAACAAAAGGAGATGTAACTAAGGCATTGGATATATATTACTGTAATTCTGGCAATCTTGATGAGAATGAAAAATCAGTTCAAGTTGAGTGTAAAATAGATAACCTTTCATCAGAAAAGAAATGTGTGTCACAGGAATTGAGAGCAACACCTGATATTTCTGTGCAGAGTGTATTAAAAGAGACCGTAGATGCAACTCTTGTATCTCTGCCACCGGAAAAGTACAACCCTAGTGAACATGCATGCTGGAGAGGTGGACAGCCTGCTCCATATTTACATCTTGCAAGAACCTTTAGCCTGCTTGAGGATGAGAAGGGGAAGATAAAGGCTACCTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCCTGTCTCCAATGGATGTACTGCCTGCTGTGTATCTATGCACAAATAAAATTGCTTCAGCCCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTGGTTACTGCAGCGCTAGAAGAGGCGTGTGGAACAAAACGATCAAGAATTAGGGAGATGTATAACAAGTTTGGAGATCTTGGTGATGTTGCTCAAGAGTGTCGACAATCACAGAGATTGCTTGCTCCACCAACACCACTTTTAATTAAAGATGTTTTCTCTGCACTCCAAAAAATAAGGAATTTGCGTATTGGAGCAATGATTAGAACTGTTTTGCCTGCCCTGGCTCAAGCTGTTGTTATGAATTCCTGTCCTACTTTGCAACAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCGGTGGCAATTGTTGAAGCATACAACATACTCCCAACTTTGATATGGGAGCTCAAAGTTATGGCACAAGGAGTTTGTGAACGTCTCTGGGATTATCAGAAAATGgtcaagaagaaaggaaaagTGCAAATTGTTTTTGAGCTAGATGAACTGAATATCACATATGGAATATTGGTTAATATTGGGCGTGTTGATATGGGGTATGATGGCCAGAGAGCTCAGATTCACAAATTAGATGATGGTTCTATCCGTGTTTTTTCAAGAAATGGAGATGAAACAACATCAAAATTTCCAGATCTGATTGACATAATTAAGGAATCCTGGAAGCCTGCTGCAGTGACTTTTATACTGGATGCAGAAATTGTTGGTATTGATAGGAAGAATGGCTATAGGTTTATGGCTTTCCAGGAGTTATCTTCACGAGGGAGAGGAAGTAAAGATGCCACAGTTAGTACGGATAGCATaaaggtatga 3258 0.3978 MASKPSPIPKTQTLNSLHLFLTAHQSLHSPPLPPLPSSLPQSKLIPNTRFLIDAFRHAGDYSVSYFLSHFHSDHYTGLTPNWSKGVIFCSNTTSRLLVQVLKVPSKFVVPLRLCDPVEIDGCEITLVDANHCPGAVQFLFKIPGAGGKCERYVHTGDFRFSKAMKSEPLLDAFVGADAVFLDTTYCHPKFQFPTQEESVAYIVDVVGTSGGEYDCSNRDVLFLVATYVVGKEKILLELARRLKRKVHVDTRKMEVLRVLGYGKSGEFTEDDSETNIHVVGWNVLGETWPYFRPNFVKMKEIMTERGYSKVVGFVPTGWTYEVKHNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVEKTDSRHAAKMMKHFAGLVDETANKQEFLRGFHCASGEVGLKFKKDGSDALKPGQNVETKVELSDKQGDRSNNPDIVLNDSSSMREPGPRDPNEEKEKLMQEIRCFLPTWVTQKQVLELISNSGSNVVEAISNFYERETEFHEEVFSCQTSVSASACLSNSDSLSKPPVAPVVTDNTCKSVDIFPSQNSKLSTQRHSVASSVLPAKRKRNSERKINKKVKVDAKSDSSGPKQSTITKFFTKVLPGVTQSGNSGSNSDQSPRVEDSLLSDVEKLYKDEIDQFMQIINGNESLKNYAATTIEKTKGDVTKALDIYYCNSGNLDENEKSVQVECKIDNLSSEKKCVSQELRATPDISVQSVLKETVDATLVSLPPEKYNPSEHACWRGGQPAPYLHLARTFSLLEDEKGKIKATSMLCNMFRSLLALSPMDVLPAVYLCTNKIASAHENKELNIGGSLVTAALEEACGTKRSRIREMYNKFGDLGDVAQECRQSQRLLAPPTPLLIKDVFSALQKIRNLRIGAMIRTVLPALAQAVVMNSCPTLQQDGTAENLKEKLQGLSVAIVEAYNILPTLIWELKVMAQGVCERLWDYQKMVKKKGKVQIVFELDELNITYGILVNIGRVDMGYDGQRAQIHKLDDGSIRVFSRNGDETTSKFPDLIDIIKESWKPAAVTFILDAEIVGIDRKNGYRFMAFQELSSRGRGSKDATVSTDSIKV 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4564 1085 SUPERFAMILY Metallo-hydrolase/oxidoreductase 46 368 IPR036866 -
Sto8g4564 1085 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 5 764 - -
Sto8g4564 1085 MobiDBLite consensus disorder prediction 560 603 - -
Sto8g4564 1085 Pfam ATP dependent DNA ligase domain 993 1077 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Sto8g4564 1085 Gene3D - 45 367 IPR036866 -
Sto8g4564 1085 Gene3D - 191 345 - -
Sto8g4564 1085 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 740 948 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto8g4564 1085 Gene3D DNA ligase/mRNA capping enzyme 986 1085 - -
Sto8g4564 1085 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 996 1073 - -
Sto8g4564 1085 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Sto8g4564 1085 Gene3D - 886 959 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto8g4564 1085 Gene3D - 740 885 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto8g4564 1085 Pfam DNA ligase N terminus 761 886 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Sto8g4564 1085 PANTHER DNA LIGASE 5 764 - -
Sto8g4564 1085 MobiDBLite consensus disorder prediction 432 466 - -
Sto8g4564 1085 CDD SNM1A-1C-like_MBL-fold 43 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4564 Sto-Chr8 48194353 48206175 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4564 738 1085 Core DNA Replication Machinery Family AT1G08130 29.899 1.74e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4564 - - gmx:100807673 1373.99