LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g4563	ATGGATAGAGCATGTGCTCTAAGGCTTTTGGGTTTTCCTCTCCGTTTAAGGCGAAAATATCTGAAGGATTTGTTCTGTGATGAGAAACATGGCTATTTTGAATATGCAAAAGAAATGACGATTGAAGCAGATGACGCTTGCTTACCCAATGAAGCCACAATAACTAAGATAAACTCTTTCCTAGAAGATGCAATCCGTTCATCTTGTGAAGGAATTATGGTGAAATCTTTAGATGTTGATGCTGCGTATACTCCTTCAAAGCGTACTGACACATGGTTAAAGGTCAAGCGGGACTATGTGGAAGGTTTAAATGATTCTCTTGATTTAGTACCAATCGGTGCTTGGCATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCGGAAACAGAGGAGTATCAAAGTGTATGCCGTGTGATGTCTGGATTCTCAGATTCCTTTTACATAGAGATGAAAGAATTCTTTTCTGGGGACAAAATCTTGTCGAAAAAGCCACCATATTATCAAACAGCTGAAGTACCGGACAAGTGGTTTCCTCCACTACTTGTTTGGGAAATAAGAGGTGCAGAGTTTACAGTATCCCCAGTTCACCATGCTGCCATTGGTTTGGTTCATTCTTCTCGTGGCATCTCAATCAGGTTCCCAAGGTTTGTTCGCAGTTTGTCCGACAGGAACCCAGAAGAATGTAGCACGGCTGCTGACATAGCTGAAATGTTTCATTCTCAGACTCGGAAAATGGATGTGGCCGCTGACGATTGA	780	0.4231	MDRACALRLLGFPLRLRRKYLKDLFCDEKHGYFEYAKEMTIEADDACLPNEATITKINSFLEDAIRSSCEGIMVKSLDVDAAYTPSKRTDTWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKILSKKPPYYQTAEVPDKWFPPLLVWEIRGAEFTVSPVHHAAIGLVHSSRGISIRFPRFVRSLSDRNPEECSTAADIAEMFHSQTRKMDVAADD	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g4563	259	Pfam	ATP dependent DNA ligase C terminal region	122	230	IPR012309	GO:0003910\|GO:0006281\|GO:0006310
	Sto8g4563	259	ProSitePatterns	ATP-dependent DNA ligase signature 2.	70	96	IPR016059	GO:0003909
	Sto8g4563	259	Gene3D	-	13	101	-	-
	Sto8g4563	259	CDD	OBF_DNA_ligase_I	105	248	-	-
	Sto8g4563	259	PANTHER	DNA LIGASE 3	9	255	-	-
	Sto8g4563	259	SUPERFAMILY	DNA ligase/mRNA capping enzyme, catalytic domain	9	97	-	-
	Sto8g4563	259	PANTHER	DNA LIGASE 1/3 FAMILY MEMBER	9	255	-	-
	Sto8g4563	259	Gene3D	-	102	258	IPR012340	-
	Sto8g4563	259	ProSiteProfiles	ATP-dependent DNA ligase family profile.	9	134	IPR012310	GO:0003910\|GO:0005524\|GO:0006281\|GO:0006310
	Sto8g4563	259	SUPERFAMILY	Nucleic acid-binding proteins	105	249	IPR012340	-
	Sto8g4563	259	Pfam	ATP dependent DNA ligase domain	9	96	IPR012310	GO:0003910\|GO:0005524\|GO:0006281\|GO:0006310

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g4563	Sto-Chr8	48188411	48190895	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g4563	8	249	Core DNA Replication Machinery Family	AT1G08130	40.984	1.63e-64	213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g4563	-		-	gmx:100807673	457.988