Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4551 ATGGACCCATCCTCGATCCCTCCTCCGGCCACAATCCCCTCCTCCATCTCCCTCTTCTCCGTCGCCGAACCCAACgctaacaacaacaacaaccaccaccaccaccatgtcCCTCTTTCCGCCACCGCCAATCCAGCTCCGGCTGCCGTGGTTCCGCCTCCCGTATCCGGTTCAGCTCAGGCTCTGCCTCAAGGTCAAGCTCAGGCTTCCACACATCCTCCGTATTCTGAGATGATATACGCAGCAATCGAGGCGCTGAAGGAGAAAAATGGTTCGAGCAAGAGAGCTATCGCGAAGTACATAGAGCAAGCGTATAGTGACCTTCCACCGACTCACTCCGCCTTGTTGACTTACCACCTTCAGCGCTTGAAGAACAATGGACTACTCGTTATGGTCAAGAAATCTTACAAGCTCCCTAGATCTGATGGTTCTCCTTCCACACCTCAACGAGGGCGTGGAAGGCCGCCCAAGCTCAAGCCTCAGCCTCAGGGTCAGGCCCAGGCCCAAGTCCAAGCCCAGGCCCAGTCCGAGGTTCAGCTGGAGGCGAACGCCGCGGCGGCGCAGCAAAATCTGCAAAATGCTGAGCCCGTGTGGGTTGCTCTTGGGCTTGCTGATGAGCCCGCGGAAGTGAAGAAAAGAGGCCCGGGTCGTCCTCGGAAGAGCGGGGTGGTAGTGGAGGGAGTGGGCCTACCTGGGCCGGTTGTGAGGAGAGGCCGTCCACCGGGAACCGGGAGATCTAGGTTGCCGAAGAGGCCTGGGCGTCCTCCTAAGCCGAAATCTGTCTTGAATATCTCTAACGGGCTGAAGAGGCGACCGGGTCGCCCCCCTAAAATCCAATCGAAACCTACTGTCATTCCATTCGCGGCTCCTGCTCCTACTGTACCTGCTGTGCCTACCGCACAGGGAGGAACCGCACCGGACGCTATAGTTCCTATTGAAACTCCGAGACGCAGAGGACGGCCTAAGAAGTATGCAGGTGTAGTGCCGGCTGCCGGAGCTCCTTCTCAAGGAGTTGTTAGCCGTGGCCGTGGACGCGGACGCGGTCGTGGCCGTGGTGTCTTCCGGAGCTCCACCGGAAGACCTGTTGGCCGGCCAAAGAAGGGAACAACTTCTGATTCTACTGCAGCAAATGTTGCTAATGAAGATCTCAAGAGGAAACTTGAATATTTTCAAACAAAAGTAAAGGAATCTCTCAGTGTGATCAAGCCTCATTTTAACCATGAGAGCCCAGTCACCGCAATTGCAGCAATCCAAGAGCTAGAAATACTGGCAACCATGGACCTTAATGCACCTTTAACCGATGAAACACAGCAACTGCAGCCTATGTCTCAGCCACAGATGCAGCCGCAGCAACCACAACAGCAACCACAACAGCCGGAATTTCAACCGCAGCAACTGCCTCAGCCACAGCTGTTTCATCATCAGTCGTTGCCGCAGCAGCATTTGTATCAGCAGCAATTCACGCAGCAGCAGATTTATCAACATCAACAGCAATTGTCGCAGCCGCAGATGTATGGAAATCAGTTGCCGCAAGTACAGATGCAGTCGCAGCAGCCGCAATTGTTTCATCCTCATGCATGA 1581 0.5395 MDPSSIPPPATIPSSISLFSVAEPNANNNNNHHHHHVPLSATANPAPAAVVPPPVSGSAQALPQGQAQASTHPPYSEMIYAAIEALKEKNGSSKRAIAKYIEQAYSDLPPTHSALLTYHLQRLKNNGLLVMVKKSYKLPRSDGSPSTPQRGRGRPPKLKPQPQGQAQAQVQAQAQSEVQLEANAAAAQQNLQNAEPVWVALGLADEPAEVKKRGPGRPRKSGVVVEGVGLPGPVVRRGRPPGTGRSRLPKRPGRPPKPKSVLNISNGLKRRPGRPPKIQSKPTVIPFAAPAPTVPAVPTAQGGTAPDAIVPIETPRRRGRPKKYAGVVPAAGAPSQGVVSRGRGRGRGRGRGVFRSSTGRPVGRPKKGTTSDSTAANVANEDLKRKLEYFQTKVKESLSVIKPHFNHESPVTAIAAIQELEILATMDLNAPLTDETQQLQPMSQPQMQPQQPQQQPQQPEFQPQQLPQPQLFHHQSLPQQHLYQQQFTQQQIYQHQQQLSQPQMYGNQLPQVQMQSQQPQLFHPHA 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4551 526 MobiDBLite consensus disorder prediction 22 37 - -
Sto8g4551 526 MobiDBLite consensus disorder prediction 136 174 - -
Sto8g4551 526 CDD H15 69 148 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto8g4551 526 MobiDBLite consensus disorder prediction 438 466 - -
Sto8g4551 526 PRINTS AT-hook-like domain signature 149 159 IPR017956 GO:0003677
Sto8g4551 526 PRINTS AT-hook-like domain signature 313 324 IPR017956 GO:0003677
Sto8g4551 526 PRINTS AT-hook-like domain signature 357 367 IPR017956 GO:0003677
Sto8g4551 526 MobiDBLite consensus disorder prediction 363 378 - -
Sto8g4551 526 MobiDBLite consensus disorder prediction 22 71 - -
Sto8g4551 526 Gene3D - 67 150 IPR036388 -
Sto8g4551 526 SUPERFAMILY "Winged helix" DNA-binding domain 70 145 IPR036390 -
Sto8g4551 526 MobiDBLite consensus disorder prediction 493 526 - -
Sto8g4551 526 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Sto8g4551 526 SMART AT_hook_2 234 246 IPR017956 GO:0003677
Sto8g4551 526 SMART AT_hook_2 269 281 IPR017956 GO:0003677
Sto8g4551 526 SMART AT_hook_2 315 327 IPR017956 GO:0003677
Sto8g4551 526 SMART AT_hook_2 212 224 IPR017956 GO:0003677
Sto8g4551 526 SMART AT_hook_2 344 356 IPR017956 GO:0003677
Sto8g4551 526 SMART AT_hook_2 359 371 IPR017956 GO:0003677
Sto8g4551 526 MobiDBLite consensus disorder prediction 209 283 - -
Sto8g4551 526 Coils Coil 83 103 - -
Sto8g4551 526 SMART h15plus2 69 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto8g4551 526 PANTHER HISTONE H1-LIKE 50 438 - -
Sto8g4551 526 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 71 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto8g4551 526 PRINTS Histone H5 signature 58 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sto8g4551 526 PRINTS Histone H5 signature 85 102 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sto8g4551 526 PRINTS Histone H5 signature 208 227 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Sto8g4551 526 Pfam linker histone H1 and H5 family 72 134 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto8g4551 526 MobiDBLite consensus disorder prediction 317 378 - -
Sto8g4551 526 PANTHER HISTONE H1 50 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4551 Sto-Chr8 48099896 48105601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4551 68 181 Single Myb Histone (SMH) Gene Family AT1G49950 33.071 3.35e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4551 - - gmx:547676 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g4551 8 48099896 48105601 Sto8g4551 8 48099896 48105601 ECH