Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4520 ATGCAGATTCAAGCTAGAGCAATTCCACCACTTTTGATGGGGAAAGATGTTCTTGGTGCTGCAAGGACAGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACAATGTTCAGTTCACTCCTCGTAATGGAGCTGGTGTTATAGTCATCTGCCCAACTAGGGAGCTTGCAATACAGACACATGCTGTAGCAAAAGAACTTCTCAAGAACCACTCCCAAACCCTTGCATTGGTTATTGGAGGTTCAGCTAGGAAAGGAGAAGCTGAACGAATTGTTAAAGGAGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATCTTTAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAACTCTTGCCAAAGAATAGGCAAACGGCTTTGTTTTCAGCTACACAAACGAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACGAATGAAGGATTGCAACAAGGCTATGTTGTTGTTCCCTGTGACAAGCGATTTGTTGTTCTCTATTCTTTTTTGAAGAGATATCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTAAAATTCCATGCAGACCTTCTCAATTATATTCAGATTGAGTGCTTTAATATACATGGAAAACAAAAGCAGCAGACAAGGACTACTACATTCTTTAACTTCTGCGCAGCTGAAAAAGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTTGATATACCTTCTGTGGATTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATACATTCATAGGGTTGGTCGAACAGCCCGTGGGGAAGGTGGCAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTAAAGGCAGCGAAGGTTCCTGTGAAGGAGTATGTCTGGGATGAAAAGAAGATGGCAAATATACAATCTCACCTGGAAAAGCTGGTGGGAAACAACTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATACTAGCATATAATTCACATTCCATGAAGGACATATTTAATGTCCATCGCCTTGATTTACAGGCTGTGGCTACTTCATTCTGTTTTTCAAATCCACCAAAGGTAAGTTTAGGCATAGACAGCAGTGCTTCAAAGCACAGGAAGAAAATGCGTAAAGTTGAAGGGAGCAGACATGGATTCAGTGACAGCAATCCCTATGGGAAGAAAAGTGCTGAAGATAAGAGGCAATTTGTGAGGCATTAA 1395 0.4072 MQIQARAIPPLLMGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGAGVIVICPTRELAIQTHAVAKELLKNHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIFKNLKCLMIDEADRILEANFEEEMKQIIKLLPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLQQGYVVVPCDKRFVVLYSFLKRYQSKKVMVFFSSCNSVKFHADLLNYIQIECFNIHGKQKQQTRTTTFFNFCAAEKGILLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYVWDEKKMANIQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVATSFCFSNPPKVSLGIDSSASKHRKKMRKVEGSRHGFSDSNPYGKKSAEDKRQFVRH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4520 464 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 197 367 IPR001650 -
Sto8g4520 464 PANTHER RNA HELICASE 2 458 - -
Sto8g4520 464 Pfam Domain of unknown function (DUF4217) 359 419 IPR025313 -
Sto8g4520 464 MobiDBLite consensus disorder prediction 424 464 - -
Sto8g4520 464 CDD SF2_C_DEAD 198 328 - -
Sto8g4520 464 Pfam Helicase conserved C-terminal domain 213 317 IPR001650 -
Sto8g4520 464 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 129 137 IPR000629 -
Sto8g4520 464 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 8 183 IPR014001 -
Sto8g4520 464 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 2 458 - -
Sto8g4520 464 SMART helicmild6 237 318 IPR001650 -
Sto8g4520 464 SMART ultradead3 1 201 IPR014001 -
Sto8g4520 464 CDD DEADc_DDX18 2 185 IPR044773 GO:0003724|GO:0005524
Sto8g4520 464 Gene3D - 1 185 IPR027417 -
Sto8g4520 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 339 IPR027417 -
Sto8g4520 464 Gene3D - 194 437 IPR027417 -
Sto8g4520 464 Pfam DEAD/DEAH box helicase 2 172 IPR011545 GO:0003676|GO:0005524
Sto8g4520 464 SMART DUF4217_3 358 421 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4520 Sto-Chr8 47880065 47884974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4520 3 340 Eukaryotic Initiation Factors Gene Family AT3G19760 27.729 2.06e-42 153