Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4465 ATGGCGGTTGAGTGCGCACCACGCACACACATATGCGCCTTGACGACCCGAATTGCCATTTTCCCAATCCAAGTTAGAAACGTTCTCATCCACGCAACTCAAGAGAAATTCGCGAGCGAGCACTCGGAACAACCAGTTAAGAAGGGATCGGGTGTAGCTTCCATCTTGTGTTTGGTCTGTGATTCAATTAGTTCAGTGTCGGCAGAGGCGAGCTTTGTGTGTGGAACAACAAATACCATGAGCATGCAAGCCCGACAAGAACGAAGGGATCGGTCCAGGGTTGCTGCCCAAGGTCCTCGTCGGGAATGGGTTCCTAGAGCGCCTGTTTCTGCCACCACCACAGCTACTGCACCGCCATCAAATTTGCCTTTAGATCAAAATGGCGATACTGGATGCTCAAATGATAGTGTTGCTCCACCAGCCAATCAGCATAGAAGCAGCCATGGGTCAAGGGGTCATGCAAGTCGTCCTATGAATCAGagaagggaaagggaaaaggGAAGGAGCGAGAATCAGGTGGGCAAAGCAGTGAGGGACTCTAATTTGCCTCAACTGTTGCAAGAGATTCAAGAGAAGCTCATGAAAAGTGCCGTAGAATGCATGATTTGCTATGACATGGTTCGTAGATCTGCGCCTATCTGGTCTTGCTCCAGTTGCTACTCTATCTTTCACCTGAATTGTATAAAGAAGTGGGCTCGAGCACCTACTTCTGTTGATTTGTCTGCAGAGAAGAATCAAGGATTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTACAACTAACATCATTGAGGGAGATTAGGTATCTATGCTTTTGTGGAAAGAGGCCAGACCCACCAACTGATTTGTATCTCACACCACATTCTTGTGGAGAGCCGTGTGGGAAGCCTCTTGAGAGGGAGGTGTTCACTGGAGGGAAAGGGAGTAAAGATGATCTTTGTCCTCATGTTTGTGTATTGCAATGCCATCCTGGTCCCTGCCCTCCTTGTAAAGCATTTGCACCACCACGTATGTGTCCTTGTGGGAAGAAAACAATTACCACACGTTGCTCTGATCGATCATCTGTCCTTACCTGTGGTCAACGCTGTGATAAGCTTCTTGAGTGTGGGCGTCATCGGTGTGAACAAGTTTGTCATGTGGGTCCTTGTGATCCTTGTCAGATTCTAATCAATGCCACTTGCTTCTGCAATAAGAAGGTGGAGGTTATTCTTTGTGGGGATATGGCTGTGAAAGGTGAAATTAAAGAAGAAGGTGGTGTTTTTTCCTGTGGTTCCAGTTGTGGGAAGAAACTTAGTTGTGGTAATCATGTTTGTAGTGAGATTTGTCATCCAGGCAACTGTGGGGAGTGTGACTTGTTACCAAGCCGAATCAAGACATGCTATTGCGGGAAAACAAGATTGGAGGAGAAACGACAAAGTTGTTTGGATCCAATACCGACCTGCTCACAAGTATGTGACAAGGCCCTTCCTTGTGGGATGCATCATTGTAGAGAGGTATGTCATGCTGGGGATTGTCCACCATGTATGGTTCTAGTCTCCCAAAAGTGTCGGTGTGGCTCATCATCCCGAACTGTGGAGTGCTATAAGACCACGATGGAGAATGAGAAATTCACTTGTGAAAAGCCTTGCGGGCGAAAAAAAAGCTGTGGAAGGCACCGATGTAATGAACGGTGCTGTCCACTTTCTAATCCACATAATCATTTAAGTGGTGATTGGGATCCTCACTTTTGTTCTATGCCATGCGGAAAGAAACTTAGGTGTGGGCAACATGCATGTGAGTCCCTCTGTCACAGTGGCCACTGTCCACCATGTCTTGAAACTATCTTCACTGATTTGACATGTGCTTGTGGTAAAACTTCAATTCCTCCTCCGCTTCCTTGTGGTACACCCCTTCCCTCATGTCAGCTTCCATGTTTAGTTCCTCAGCCTTGTGGCCATTCAGCCTCTCACAGCTGTCACTTTGGAGGTTGCCCACCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGCCATGTGGTTCTTAGGAATATACCTTGTGGTTCGAAGGATATTAGATGTAATAAGCTCTGTGGGAAGACTAGACAATGTGGTTTACATGCATGTGGCAGAACATGTCACCCTCCTCCTTGTGATAATCCATCGAGTTCTGAGCAAGGTTTCCGAGCATCTTGTGGCCAAACTTGTGGTGCTCCAAGGAGAGATTGCAGGCATACTTGTACGGCTCCATGTCACCCATCATCTCCCTGCCCTGATATAAGGTGTGAATACCTTGTTACAATCACATGCACTTGTGGCCGTATAACAGCAACTGTTCCCTGTGGTGCTGGTGGCAATTATAATGCTGATTCCATACAAGAAGCTTCAATAATTCAAAAGTTGCCTGTGCCGCTTCAACCGGTGGAATCAAATGGAAAAATGATTCCCCTTGGACAAAGAAAGTTGACGTGTGATGATGAATGTGCTAAATTGGAGCGTAAGAGGGTTCTTGCTGATGCTTTTGATGTTAGCACTCCAAACTTGGACTCTCTTCATTTTGGAGAAAACTCTATGGCTTCTGAATTGCTTTCAGACATGTTGAGGCGTGACCCTAAGTGGGTTTTGTCAGTGGAGGAGAGATGTAGATTTTTAGTTCTCGGCAAGAGCAGAGGAGTCACGAACGGTTTAAAAGTCCATGTTTTCTGTCCTATGTTGAAGGATAAGAGAGATGCAGTGCGGGTTATTGCTGAGAGATGGAAGCTTGCAGTCAACGCTGCTGGCTGGGAGCCAAAACGTTTTGTCATAGTTCATGTTACCCAAAAGTCAAAGGCTCCTGCTCGCGTGCTTGGGGTTAAGGGTACTACAACTGTAAATGCACCCCTTCCACCAGCATTTGATCCTTTAGTAGACATGGACCCCCGGCTTGTTGTCTCATTTCCAGACTTACCAAGGGATGCTGATATAAGTGCCTTGGTATTGAGGTTTGGTGGTGAATGTGAACTTGTCTGGCTGAATGACAAAAATGCTTTGGCTGTTTTTAATGATCCTAGTCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGAACAGTTTACCATGGAGCTGTTGTAGTTGTCCCAAATGTTAGCACATCAACATCTTCAGCTACCAATGCTTGGGGAGGAGCTGGGACGGTGAAAGAAGGAGGAGCACTGGCTGCATTGAAGGGTAATACCTGGAAAAAGGCTGTGATTCAAGAGCCTGGTTGGAGAGAAGATTCTTGGGGCAACGAAGAGTGGGTCAGTGGGAGTTCGGCTAATATCCAGACTTCTGTTTGGAATAAAGATACACCAAAAGCCCCAATTGCTGCTACATTAAATCGGTGGAGTGTCTTGGACCAAGAATCATCTTCAAGTTCATCTGTTTCGACCATTAGAACTGAAATTTCTGGGAGACACTCAGCAAGTTCATCTTCTGTCCCGAAGTCGGAATCTGATGCAATTAGCTCAATTCCAGAAGGGCAGCATGGAGGGAATGCTAGTCCAACAGAAGTTTCTGAAGTAGTTGATGATTGGGAGAAAGCTTATGAATAA 3549 0.461 MAVECAPRTHICALTTRIAIFPIQVRNVLIHATQEKFASEHSEQPVKKGSGVASILCLVCDSISSVSAEASFVCGTTNTMSMQARQERRDRSRVAAQGPRREWVPRAPVSATTTATAPPSNLPLDQNGDTGCSNDSVAPPANQHRSSHGSRGHASRPMNQRREREKGRSENQVGKAVRDSNLPQLLQEIQEKLMKSAVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVQLTSLREIRYLCFCGKRPDPPTDLYLTPHSCGEPCGKPLEREVFTGGKGSKDDLCPHVCVLQCHPGPCPPCKAFAPPRMCPCGKKTITTRCSDRSSVLTCGQRCDKLLECGRHRCEQVCHVGPCDPCQILINATCFCNKKVEVILCGDMAVKGEIKEEGGVFSCGSSCGKKLSCGNHVCSEICHPGNCGECDLLPSRIKTCYCGKTRLEEKRQSCLDPIPTCSQVCDKALPCGMHHCREVCHAGDCPPCMVLVSQKCRCGSSSRTVECYKTTMENEKFTCEKPCGRKKSCGRHRCNERCCPLSNPHNHLSGDWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPLPSCQLPCLVPQPCGHSASHSCHFGGCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDNPSSSEQGFRASCGQTCGAPRRDCRHTCTAPCHPSSPCPDIRCEYLVTITCTCGRITATVPCGAGGNYNADSIQEASIIQKLPVPLQPVESNGKMIPLGQRKLTCDDECAKLERKRVLADAFDVSTPNLDSLHFGENSMASELLSDMLRRDPKWVLSVEERCRFLVLGKSRGVTNGLKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGWEPKRFVIVHVTQKSKAPARVLGVKGTTTVNAPLPPAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPSRAATAMRRLDHGTVYHGAVVVVPNVSTSTSSATNAWGGAGTVKEGGALAALKGNTWKKAVIQEPGWREDSWGNEEWVSGSSANIQTSVWNKDTPKAPIAATLNRWSVLDQESSSSSSVSTIRTEISGRHSASSSSVPKSESDAISSIPEGQHGGNASPTEVSEVVDDWEKAYE 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4465 1182 CDD NF-X1-zinc-finger 633 681 - -
Sto8g4465 1182 MobiDBLite consensus disorder prediction 81 179 - -
Sto8g4465 1182 Pfam NF-X1 type zinc finger 548 559 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 432 449 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 315 330 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 586 603 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 368 386 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 728 753 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 696 711 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 Pfam NF-X1 type zinc finger 490 507 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 CDD NF-X1-zinc-finger 480 528 - -
Sto8g4465 1182 ProSiteProfiles Zinc finger RING-type profile. 200 256 IPR001841 -
Sto8g4465 1182 SUPERFAMILY RING/U-box 190 260 - -
Sto8g4465 1182 MobiDBLite consensus disorder prediction 1125 1182 - -
Sto8g4465 1182 CDD NF-X1-zinc-finger 422 467 - -
Sto8g4465 1182 CDD NF-X1-zinc-finger 576 628 - -
Sto8g4465 1182 MobiDBLite consensus disorder prediction 156 173 - -
Sto8g4465 1182 CDD NF-X1-zinc-finger 358 406 - -
Sto8g4465 1182 MobiDBLite consensus disorder prediction 109 154 - -
Sto8g4465 1182 ProSiteProfiles Zinc finger PHD-type profile. 197 258 IPR019787 -
Sto8g4465 1182 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 171 1179 IPR034078 GO:0003700
Sto8g4465 1182 MobiDBLite consensus disorder prediction 1125 1167 - -
Sto8g4465 1182 CDD NF-X1-zinc-finger 289 351 - -
Sto8g4465 1182 SMART znfxneu3 643 661 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 696 726 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 490 509 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 735 756 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 368 387 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 586 605 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 432 451 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 SMART znfxneu3 313 331 IPR000967 GO:0005634|GO:0008270
Sto8g4465 1182 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 171 1179 - -
Sto8g4465 1182 CDD RING-CH-C4HC3_NFX1 199 256 - -
Sto8g4465 1182 CDD NF-X1-zinc-finger 724 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4465 Sto-Chr8 47380292 47384286 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Sto8g4465 zf-NF-X1 1.2e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4465 K12236 - zju:107419567 1778.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g4465 8 47380292 47384286 Sto8g4465 8 47380292 47384286 ECH