Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4443 ATGGTATTGGGATGGCGACGCCGGAAGACCAGCCGCCGCCGCAGCGGCGGCGAACCCACGGCGGAGCTGGTGATTCCGAACCACTTCCGCTGCCCCATTTCCCTCGACCTGATGAAAGACCCCGTGACTCTCTCCACCGGCATCACCTACGACCGTGACGACATCGAGAGATGGTTCCTGGACGGCAATTCCACCTGCCCCGTCACCAACCAACCCCTCCGATCCTCCGATCTCATCATCCCCAACCACACCCTCCGCGTAATGATCCAGCACTGGTGCGTCCAGAATCGCCAGCACGGGATCGAGCGAATCCCCACTCCCCGGACCCCAATCTCGCCACCCCAAGTGGCGGAACTCCTCTGCCTCGTGAAGTCGTCAGCCCATCGAGCGACTTCCCCCCGCGACTGCCTCGAGTCCGTTCGGAAACTCGCCAGGTGGGCCGACGAGAGCGAGCGGAACCGGAGGTGCATAGTGGACAACGGCGGAACCGCCGCCCTCGCCGCCGCCTTCGACGCCTTCGCGAACGATTCGATCGAGAGGAATCTGGGTGTGTTGGAGGAGATCCTGTCCGCTCTTAATTGGATGTTCCCGATGGAAATCGAAGCCCAGAAGTGTTTGGGATCGAAGGCTTCGTTGCAATGCTTGGTTTGGTTCTTGAAGCACCAAGATCTTAGAGGGAAAGAGAAATCCATGGTCGCTCTAAAGGAGATTCTTTCCTTCGGGGACGAGAAGAATGTGGAAACTTTGGGTGAAATTGAAGGGATTAAAGAACTATTAGTGGGTTTTATTAACAAAAGAATCAACCCCACCATTACAAAAGCCTCATTATCCGCATTGGGGGTTTTGGATTCGATTTGTTCGTGTGGGGAAGGGAGGGAAGAGGCTTATGGTAATGCATTGACGATTCCTGTGTTGGTGAAGAAGATACTGAGGGTTTCAGCAATGGCCACAGATTGCTCTGTCTCTGCATTGTGGAAGCTGTGCAagaatgatgatggtgatgatgaagaagaagggagagTTCTGATTGAGGCATTGCAAGTTGGGGCGTTTCAGAAGCTCTTGTTGGTGTTGCAAGTTGGGTGTAGTGATGAAACCAAGGTGAAAGCAACGGAGCTTCTCAAGATTCTCAATCCCTATAGGGTGGGATTGGAATGCATTGAGGACTCGGATTTCAAAAATCTCAAGAGATCCTATTGA 1200 0.5233 MVLGWRRRKTSRRRSGGEPTAELVIPNHFRCPISLDLMKDPVTLSTGITYDRDDIERWFLDGNSTCPVTNQPLRSSDLIIPNHTLRVMIQHWCVQNRQHGIERIPTPRTPISPPQVAELLCLVKSSAHRATSPRDCLESVRKLARWADESERNRRCIVDNGGTAALAAAFDAFANDSIERNLGVLEEILSALNWMFPMEIEAQKCLGSKASLQCLVWFLKHQDLRGKEKSMVALKEILSFGDEKNVETLGEIEGIKELLVGFINKRINPTITKASLSALGVLDSICSCGEGREEAYGNALTIPVLVKKILRVSAMATDCSVSALWKLCKNDDGDDEEEGRVLIEALQVGAFQKLLLVLQVGCSDETKVKATELLKILNPYRVGLECIEDSDFKNLKRSY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4443 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Sto8g4443 399 CDD RING-Ubox_PUB 29 71 IPR045210 -
Sto8g4443 399 SUPERFAMILY RING/U-box 15 102 - -
Sto8g4443 399 SUPERFAMILY ARM repeat 130 377 IPR016024 -
Sto8g4443 399 Pfam U-box domain 25 97 IPR003613 GO:0004842|GO:0016567
Sto8g4443 399 ProSiteProfiles U-box domain profile. 24 99 IPR003613 GO:0004842|GO:0016567
Sto8g4443 399 Gene3D - 125 388 IPR011989 -
Sto8g4443 399 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 278 399 - -
Sto8g4443 399 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 277 - -
Sto8g4443 399 PANTHER WDSAM1 PROTEIN 13 277 IPR045185 GO:0061630
Sto8g4443 399 PANTHER WDSAM1 PROTEIN 278 399 IPR045185 GO:0061630
Sto8g4443 399 SMART Ubox_2 28 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4443 Sto-Chr8 47173864 47175180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4443 5 399 U-box Gene Family AT5G37490 39.819 3.22e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4443 - - gmx:100817623 525.398