Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4405 ATGGAACAAAAGTTTGATGCTGTCAATGATATCAATCGATCGCGGAGTAACTGGACTATCAAAATTCGCATCACAAGGCTATGGGAAAGTCCTCCTTATCCTAAAACATGCCCAGACAACACAATCGATATGGTTCTTTGTGACAAGGATGGTTCCAAAATTGCTGCTTCCGTGAAGAGTGTATTCGCAAATAAATTCAAGAATAATCTCAAGGAAGGTGCAGTGTACATCATGTCTGGGTTCAATGTCGTAGCATCCTCAAGTACGTTCCGTGCTACACGACATTCGTACAAGCTGAACTTTCAATATCAAACTCGGATAGCGCGGGCTGACGACGACGGCTCCATACACCAATTCGGATTTGAATTTGTTCCCGCTGTGAAGATCATATCCGGGGAGTTAGATCAAAACATCTTAGTTGACGTAATTGGTCGTGTTTTCAATATGTCTGAGGTGCATGAGTCGTCTTCCAGTGATCCTAACTCGATGCGGGTAACTATCTATATTGAAGACACTGATAAGACGCAGTTGGCAATCACTCTGTGGGGTCAATATGCCAATCAGATTGTCCAATACATGTCAAAAAATTCTGAGAGTGCAGCAATTGTGGTGGCATTTCAATTCTGTAAAATTAAAGATTCCATCAAGGGCTGCAGCCTGAAGATCTTTATGACAACCACTACTCCTCAAGAGGCCGCATTCGCTGGCTATCCACTTTCATCCGTTGATGAACTATATCAGTCCGGTGATAAAGCTATTGTCTGCATTCTTGCTAATGTAATACAGGTTAATAAGGATAGGGGTTGGTTTTACAATGCATGCAAAAAATGTGGAAAGAAGGTGGATCCTGATGGTCCTATATTCTGGTGTCACAGTTGCAAGGGTTTGGTTAATCAGGCAACTATTAAGTATAGAGTTGAGCTCATGGTTCTGGATGAGTCAAATTCGGCCAACGTGACTATATTTGATCGTGATGTTTTTAATATTGTTGGGTTGCAGGCACCGCAACTCCATGACGAGCACTCAAAGGGCATGCTTGTGGATGCCAATCATACAGTCAACTGGCCAGTTAAGCTTGATTCGTTTGTGGGACAAACATTCGTCTTTAAAGTTGCGGTTGTGAAATCCCAATGGAATGATTTCACATCTTTTACTGTGCAACGTATGACCAGTGATCCTTCAATAATTGATAAGTTCACTAGATATCGTCTTGCTAAGGTTGATCTTAACGCTACGGACGACAATTTGATTACAGCTGACAAGGCTATGACATCACCCATTATCGACCTGGAGGGTCGTAGGCTGACGTTTACAGACGATGCTAATTCACCTTCCACCGCAACGCTCAGTTCTGGCAAGAGGTCTATAGATGAAGCTTCTTATGAGGGCCATTCATCAAGTGAAGCGGCAAAACAATTGGTCAtgccaaaaaagaaaatcaagatcgagaaaaattga 1458 0.4163 MEQKFDAVNDINRSRSNWTIKIRITRLWESPPYPKTCPDNTIDMVLCDKDGSKIAASVKSVFANKFKNNLKEGAVYIMSGFNVVASSSTFRATRHSYKLNFQYQTRIARADDDGSIHQFGFEFVPAVKIISGELDQNILVDVIGRVFNMSEVHESSSSDPNSMRVTIYIEDTDKTQLAITLWGQYANQIVQYMSKNSESAAIVVAFQFCKIKDSIKGCSLKIFMTTTTPQEAAFAGYPLSSVDELYQSGDKAIVCILANVIQVNKDRGWFYNACKKCGKKVDPDGPIFWCHSCKGLVNQATIKYRVELMVLDESNSANVTIFDRDVFNIVGLQAPQLHDEHSKGMLVDANHTVNWPVKLDSFVGQTFVFKVAVVKSQWNDFTSFTVQRMTSDPSIIDKFTRYRLAKVDLNATDDNLITADKAMTSPIIDLEGRRLTFTDDANSPSTATLSSGKRSIDEASYEGHSSSEAAKQLVMPKKKIKIEKN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4405 485 SUPERFAMILY Nucleic acid-binding proteins 121 226 IPR012340 -
Sto8g4405 485 Pfam Replication factor-A C terminal domain 258 390 IPR013955 -
Sto8g4405 485 Pfam Domain of unknown function DUF223 44 139 IPR003871 -
Sto8g4405 485 CDD RPA1_DBD_A_like 19 107 - -
Sto8g4405 485 CDD RPA1_DBD_B_like 141 221 - -
Sto8g4405 485 SUPERFAMILY Nucleic acid-binding proteins 4 118 IPR012340 -
Sto8g4405 485 MobiDBLite consensus disorder prediction 441 474 - -
Sto8g4405 485 Gene3D - 237 408 IPR012340 -
Sto8g4405 485 CDD RPA1_DBD_C 248 417 IPR013955 -
Sto8g4405 485 PANTHER REPLICATION FACTOR A 1, RFA1 9 172 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto8g4405 485 PANTHER REPLICATION FACTOR A 1, RFA1 257 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto8g4405 485 SUPERFAMILY Nucleic acid-binding proteins 245 387 IPR012340 -
Sto8g4405 485 MobiDBLite consensus disorder prediction 441 455 - -
Sto8g4405 485 Gene3D - 114 232 IPR012340 -
Sto8g4405 485 PANTHER BNAC01G35430D PROTEIN 257 415 - -
Sto8g4405 485 PANTHER BNAC01G35430D PROTEIN 9 172 - -
Sto8g4405 485 Gene3D - 6 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4405 Sto-Chr8 46810439 46812631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4405 1 390 Core DNA Replication Machinery Family AT5G08020 23.041 8.56e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4405 - - bvg:104885244 205.297