Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4398 atggaaggaggaggaggagtagATCATAACCACTCATCAAACTCTATCTACAGAGAGTGTTTGCGGAACCATGCAGCCAGTCTCGGCAGCTACGCCACCGATGGCTGCGGCGAGTTCACCCTCGACGACACCGGCGGCGGCTGCCTCCAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGTCACGTGCCCGGGCCCCGCGCCGCCCCGAGGGCTTAGCTACACCGCCGCCGCCATGAGgggcggcggcggcggccgAGAGCCTCCGGAGCTGACGGGGGACCTGATGGACTACAGCGGCGGCGGAGGAGATCAAGGGACGCCGCCGCCGATGTCGGAGGCCGGCGGGGGATCGAAGAAGCGGTTCCGGACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGGGGTTTGCGGAGAAGCTGGGGTGGAAGCTTCAGAGGAAGGATCTAGACGATGAGATAGAGAGGTTCTGCAGAGGCGTGGGTGTGAGTAGgcaagtgttcaaggtttggaTGCATAACCATAAGAactcttcgtcttcttcttccgcTTCTACCGGCAATGCCTCATCTCTCACTCAATCACAActtcacaagtcacaacaataa 618 0.5162 MEGGGGVDHNHSSNSIYRECLRNHAASLGSYATDGCGEFTLDDTGGGCLQCAACGCHRNFHRKVTCPGPAPPRGLSYTAAAMRGGGGGREPPELTGDLMDYSGGGGDQGTPPPMSEAGGGSKKRFRTKFTAEQKEKMLGFAEKLGWKLQRKDLDDEIERFCRGVGVSRQVFKVWMHNHKNSSSSSSASTGNASSLTQSQLHKSQQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4398 205 Gene3D - 111 186 - -
Sto8g4398 205 MobiDBLite consensus disorder prediction 178 205 - -
Sto8g4398 205 SUPERFAMILY Homeodomain-like 111 180 IPR009057 -
Sto8g4398 205 Pfam ZF-HD protein dimerisation region 16 65 IPR006456 -
Sto8g4398 205 MobiDBLite consensus disorder prediction 77 123 - -
Sto8g4398 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 12 189 - -
Sto8g4398 205 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 122 180 IPR006455 -
Sto8g4398 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 189 - -
Sto8g4398 205 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 17 64 IPR006456 -
Sto8g4398 205 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 17 63 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4398 Sto-Chr8 46713032 46713767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4398 17 181 ZF-HD Transcription Factor Family AT4G24660 44.809 1.20e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto8g4398 ZF-HD_dimer 6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4398 - - jre:109020973 263.848