Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4309 ATGGAGTACGGTAGTGGAGGAAGCGGTGgcCACCACGGCCACCACCTCCTCCTCGACGGCTCCGATTCCCAGAGCAGCAAAAAGCGCTACCATCGTCATACTGCTAACCAGATTCAGAGGCTTGAATCAATGTTCAAGGAGTGCCCCCACCCGGACGAAAAGCAGAGGTTACAGTTAAGCAGAGAACTAGGCTTGGCCCCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCACGAAAGAGCTGATAACTGTTCTCTCCGAGCAGAGAACGACAAGATACGATGCGAGAACATTGCCATCCGAGAAGCCCTCAAAAACGTCATCTGCCCTTCTTGTGGTGGCCCTCCTATCAACCACGACTCTTACTTCGATGACCAAAAACTCCGTTTGGAAAATGCTCAATTGAAAGAAGAGCTCGATAGAGTCTCCAGCATCGCAGCGAAATACATCGGAAGGCCAATCTCTCAACTCCCGCCGGTTCAGCCAATTCACATCTCCTCCTTGGATTTATCAATGGGAAGCAGTTTCGCCTCGCAAGGGATTATTCCTCCTCCGCTTCCTCCTTCTTCGCTCGATCTCGATCTCGATCTCCTCCCGGGAACTTCGTCCTCCTCGTCGGGCCCCACCCTGCCGTTTCACAACCTCCCGCCGCTGTCGGACACCGAGAAGTCCGTCATCTCCGAGATTGCGGCGAATGCCATGCAGCAATTGCTGAGGCTCCTGCAGAGCAACGAGCCGCTGTGGATGAAGTCGAGCTCCGATGGGAGGGACGTGCTTAATCTCGAGGCCTACCAGAGCGTGTTTCCTAGGCCGAATAGCCATCAGCTCAAGAATCCGAATGTGAGAATCGAGGCGTCGAGGGATTGTGGAGTTGTGATCATGAATGGAATGACTTTGGTTGACATGTTTATGGACTCGAACAAGTGGATGGAGGTGTTTCCTACCATAGTCACCACGGCAGCTACCATTAAAGTGTTATCTCCTGGCATGCTGGGTAGTCACAGTGGCTCTTTGCAATTGATGTATGGAGAGTTTCAATTGCTTTCTCATCTGGTTCCGACTCGGGAATTCTACTTCGTGCGATACTGTCAGCAAATCGAGCAAGGGCTATGGGCCATTGTGGATGTTTCTTATGAGTTCCCACAAGAGAATCAGTTCGCTCCTCAGTGTCGCTCTCATCGACTTCCTTCTGGCTGCTTGATTCAGGACTTGCCTAATGGCTATTCCAAGGTTACTTGGGTTGAACATGTGGAGATTGAAGATAAAATTCCTACTCATCGGCTGTACCGGAATCTTGTCTATAGCGGGTTGGCTTTCGGAGCCGAAAGGTTTCTCACTACTCTTCAGAGAATGTGTGAAAGAATTGCTTGTCAAATGGTCACTGGAAATTCAAACCTTGATCTTGGAGGAGTGATTCCATCATCGGAAGGCAAGAGGAGCTTGATGAAGCTTGCACAAAGGATGATGAAGAATTTCTGCACGAGCATCAGCGCATCCAACGGCCACAAATGGACGACACTTTCTGGGATGAACGAGGTTGGAGTGAGAATCACAGTCCATAAGAGTTCGGATCCGGGTCAAACCAATGGGGTGGTTCTAAGTGCAGCCTCTACTCTATGGCTCCCCGTGCCTCCCCAGACTGTGTTCAGTTTCTTCAAGGACGAATCAAAAAGATCTCAGtgGGATGTGCTTTCCAGTGGTAATCCTGTTCAAGAGGTTGCTCGTATAGCCAATGGGTCTCACCAAGGGAATTGTATATCTCTTCTTCGAgcGTTCAACACAGGTCAGAACAACATGTTGATTCTGCAAGAGAGCTGCATAGACGCAGCAGGGTCCATTGTGGTGTACTGCCCGGTTGATCTGCCGGCGATCAACATGGCGATGAGCGGGGAGGACCCTTCGTACATCCCGTTGCTGCCGTCCGGGTTCACGGTGTCGCCGGAcggcggGAACGCGGGAGGAGGGTCACTGGTGACGGTGGGGTTTCAGATTCTGGTGAGCAGCTTGCCGTCGGCGAAGCTCAACTTGGAGTCGGTGACCACCGTGAATAATCTCATCTCCACCACAGTCCAGCAAATTAAGACGGCGTTGAACTGTCCTACTTCATGA 2130 0.5085 MEYGSGGSGGHHGHHLLLDGSDSQSSKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCSLRAENDKIRCENIAIREALKNVICPSCGGPPINHDSYFDDQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSSFASQGIIPPPLPPSSLDLDLDLLPGTSSSSSGPTLPFHNLPPLSDTEKSVISEIAANAMQQLLRLLQSNEPLWMKSSSDGRDVLNLEAYQSVFPRPNSHQLKNPNVRIEASRDCGVVIMNGMTLVDMFMDSNKWMEVFPTIVTTAATIKVLSPGMLGSHSGSLQLMYGEFQLLSHLVPTREFYFVRYCQQIEQGLWAIVDVSYEFPQENQFAPQCRSHRLPSGCLIQDLPNGYSKVTWVEHVEIEDKIPTHRLYRNLVYSGLAFGAERFLTTLQRMCERIACQMVTGNSNLDLGGVIPSSEGKRSLMKLAQRMMKNFCTSISASNGHKWTTLSGMNEVGVRITVHKSSDPGQTNGVVLSAASTLWLPVPPQTVFSFFKDESKRSQWDVLSSGNPVQEVARIANGSHQGNCISLLRAFNTGQNNMLILQESCIDAAGSIVVYCPVDLPAINMAMSGEDPSYIPLLPSGFTVSPDGGNAGGGSLVTVGFQILVSSLPSAKLNLESVTTVNNLISTTVQQIKTALNCPTS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4309 709 SUPERFAMILY Bet v1-like 483 701 - -
Sto8g4309 709 SUPERFAMILY Bet v1-like 229 462 - -
Sto8g4309 709 Pfam START domain 235 461 IPR002913 GO:0008289
Sto8g4309 709 Gene3D - 233 463 IPR023393 -
Sto8g4309 709 ProSiteProfiles START domain profile. 226 464 IPR002913 GO:0008289
Sto8g4309 709 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Sto8g4309 709 Gene3D - 18 98 - -
Sto8g4309 709 SUPERFAMILY Homeodomain-like 8 84 IPR009057 -
Sto8g4309 709 CDD START_ArGLABRA2_like 230 460 - -
Sto8g4309 709 Pfam Homeodomain 27 82 IPR001356 GO:0003677
Sto8g4309 709 CDD homeodomain 27 85 IPR001356 GO:0003677
Sto8g4309 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 7 707 - -
Sto8g4309 709 SMART START_1 235 461 IPR002913 GO:0008289
Sto8g4309 709 MobiDBLite consensus disorder prediction 15 29 - -
Sto8g4309 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 7 707 IPR042160 -
Sto8g4309 709 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Sto8g4309 709 SMART HOX_1 26 88 IPR001356 GO:0003677
Sto8g4309 709 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4309 Sto-Chr8 45895698 45898816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4309 22 709 Homeobox Transcription Factor Family AT1G73360 62.659 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto8g4309 START 2.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4309 K09338 - gmx:100809075 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g4309 8 45895698 45898816 Sto8g4309 8 45895698 45898816 ECH