Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4184 ATGTCACAAGGAATGGCTACGATGTTTGACAGTATTAGGGGCATCCACGCTTTGCGTACCGACTGGACGATCAAAGTTCGTGTTCTTCGACTCTGGAAGGCACCCCCTTATCCGAAGAATTCTCCTCATTCGTCATTGGAGATGGTGTTGTGTGACCGTGAGGGTACCAAAATAGGGGCACACGTTAAGAGTCCATTTGCAGTAAAATTATTGAACGTATTGAAGGAAGGTTCTGTATATGTTATGTCGCAATTCACAGTCGGTTCCAATTCTGGTAATTTTCGCGCTGCTAAGCATGAGTTTAAGttgaactttcaatttcaaaCACGCATTGCTCAAACTGATGATGACGAATCCATTGAGAAATATGGTTTTGAGTTTCTTCACGCATCCACTATCTTTGCTCCAGACTTCGACAAGGACATTTTAGTTGATGTCATTGGGCGGCTCATCCATATGAGCGATGTCCAACAAGCTTCTTCTGATCCTAAAACTAAACGTGTCAACATTCAACTCGAGGACCAGATGAAGTCAAAGATAACAATAACCCTATGGGGTTCTTTTGTTGAACAACTTTTGGAGTATTCACGTACTCATTCCGATGGTGCTATTGTTATTGCGATCCAATATTGCAAGATTAAAGAATATGGCGGTTTACAGCATGAAGAATTAGCAAGCCCTATTATTAAAAATCTCACTAACCCTGCTACCCATGAAAGTCCTCTTGAAGCTGCCTTTGCTGAGTTGCCACTGTCAAGTATTCAAGACTTTTATCATGCGAGGGATTCATCTTTATTTGTTGTCCTCGCATCTGTACTGAAGGTGAATGTTGACCGAGGTTGGTTTAAGGTCGAGTTAATGATATTAGACGATTCGGGAACAGCTAATGTTACAATTTTTGATAAGGATGTTGAGGGTTTCCTAGGAATATCTGCAATTGACTTAAGGAGGGAACACTTGCAGATGCCGGAGAAGTTTGATAGGTTTTTAGGCCAAATGTTTGTCTTCAAAATATTGGTGAAAACGATGAACTGGAACAATTCTTATTCCTTCACTGTACAGAAAATGACTTCCGATCATGACTTGGTTGAGAAGTTCAAAAGAATGGCAAAGGCAAAGCTTATTGATGTTGGTGTTGTTCCTAATTCTTTGACAACCCCTGGGCAGACAAAGGCAGTAACTCACCTTGGCTTGGATGCGCGTAGGCTATCTTTTGTTGGTGATAATCACTCTCCATCTTCCTCTAACGCTTGCAATGGAAAGCGTTCTCATCCTGATTCTCCTTCTGACAATTCCATTCATTATGAGAATGCCAAGAATGGAGAAGCCACTAAGAAGAAGCTGAAGGATATAATTTAA 1359 0.4069 MSQGMATMFDSIRGIHALRTDWTIKVRVLRLWKAPPYPKNSPHSSLEMVLCDREGTKIGAHVKSPFAVKLLNVLKEGSVYVMSQFTVGSNSGNFRAAKHEFKLNFQFQTRIAQTDDDESIEKYGFEFLHASTIFAPDFDKDILVDVIGRLIHMSDVQQASSDPKTKRVNIQLEDQMKSKITITLWGSFVEQLLEYSRTHSDGAIVIAIQYCKIKEYGGLQHEELASPIIKNLTNPATHESPLEAAFAELPLSSIQDFYHARDSSLFVVLASVLKVNVDRGWFKVELMILDDSGTANVTIFDKDVEGFLGISAIDLRREHLQMPEKFDRFLGQMFVFKILVKTMNWNNSYSFTVQKMTSDHDLVEKFKRMAKAKLIDVGVVPNSLTTPGQTKAVTHLGLDARRLSFVGDNHSPSSSNACNGKRSHPDSPSDNSIHYENAKNGEATKKKLKDII 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4184 452 Gene3D - 261 373 IPR012340 -
Sto8g4184 452 Gene3D - 10 117 IPR012340 -
Sto8g4184 452 Pfam Domain of unknown function DUF223 47 143 IPR003871 -
Sto8g4184 452 CDD RPA1_DBD_A_like 23 111 - -
Sto8g4184 452 SUPERFAMILY Nucleic acid-binding proteins 282 358 IPR012340 -
Sto8g4184 452 CDD RPA1_DBD_B_like 145 239 - -
Sto8g4184 452 MobiDBLite consensus disorder prediction 409 452 - -
Sto8g4184 452 Gene3D - 118 241 IPR012340 -
Sto8g4184 452 MobiDBLite consensus disorder prediction 409 438 - -
Sto8g4184 452 PANTHER REPLICATION FACTOR A 1, RFA1 12 207 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto8g4184 452 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 12 207 - -
Sto8g4184 452 SUPERFAMILY Nucleic acid-binding proteins 9 118 IPR012340 -
Sto8g4184 452 SUPERFAMILY Nucleic acid-binding proteins 127 222 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4184 Sto-Chr8 44617675 44620162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4184 9 220 Core DNA Replication Machinery Family AT5G45400 22.831 5.99e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4184 - - soe:110778367 164.851