Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4183 ATGGTCGAATCAGACGAAGAAAATCCCGGCCTTCCTCCCAAGTCAAAGCCAGCTGAGGAACCTGCGTATATCATGGATTTTGATCCCGACCTGGAAAGTTCCTGGCCCTTTGATCAGATTTCGTTTGCCTCCAACCCTGCGTCACCGTTTCTTTTCTCTCCGTCCTTCGAGCAACCTTTTTCTCCTCTCTGGGCCTTTTCAGACGTAGATGACGACAAGCACACCAAACCTACCACTTCATCCTTCGCCGGCAATTCAAGTTCAGTAAATGAAGATCCAGTGGAAAATGATGAAAGAAAAAAGCTATCGCCACCCCTTGTGCCTCTGCCCCAATTAGAGATTCCAGATAGGTACTGTCTAATCAAGGAGAGGATGACAAAAGCACTTCGCCAGTTCAAAGAGTTGACTGAACAGAATGTTCTTGCTCAAATTTGGGCACCTGTGAGGAATGGGAATCAGTATGTGCTTACAACTTCAGGGCAACCCTTTGTCCTTGATCCACATAGTAATGGACTCTATCAATATAGAACTGTCTCTCTGACGTATGCGTTTCCTGTGGATGGGGAGAGAGATGGAATCCTGGGACTTCCTGGTCGAGTTTTTCAAAAGAAGTTACCAGAATGGACTCCCGATGTTCAGTTTTATTCTAGCAAAGAGTATTCACGCCGTGATCATGCTCAACATTACAATGTTCGTGGAGCATTGGCTTTACCTGTCTTTGAACCTTCAGGGCAGTCATGTGTTGGTGTTTTGGAGTTGATAATGACTTCACAAAAGATTAACTATGCTCCTGAGGTTGATAAGGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAGGAGCTCAGAAGTTTTGGACCATCCTTACACTCAGATTTGTAATGAAGGTCGGAAGAATGCATTAGCAGAGATTTTGGAAATACTGACAGTGGTGTGTGAAAATCATCAATTACCTCTGGCCCAAGCATGGGTTCCTTGTAGGCATCGGAGTGTTTTGGCCAATGGTGGTGGTCTGAAGAAGAGTTGTTCTAGCTTTGATGGTAGTTGCATGGGGCAAGTGTGTATGTCTACAACTGATGCAGCATTGTATGTCCTAGACACTGGTATGTCGGGTTTCCGTGAAGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTTGTCGCACAACATGTGCTTCTGCAGAAATATTACCCAATTCTGTAAATTTGATTACCCTTTAGTACATTATGCTCTAATGTTTGGATTAACCAGTTGTTTTGCAATCTGCTTACGAAGCTCTCATACTGAAAATGATGATTATATATTAGAGTTTTTCCTACCTCCTAAAATAATAGACTTTGATGAACAAAAGACATTGTTGGGATCCTTATTGGCAACAATGAATCAGAACTTACGGAGCCTTACAATTGCTGTTGGCATTGAACTTAAGGAAGAAGGTTCAGTTGAAATCATTGAAGCAACAAATGAAAGAGTTTATTCAAGGGTTGAAGCTATACTGATTGCCCAATTCACTAAGTCACCACCTGGATTTGATGCCTCGCCAAATATGGAGATGGTACCACGAGATTCATCAGATCCGCAAATAATGATGTATTACGATGACAAAAATGGTGGGGGGGATCTTGGTGATAATGCAGCTAGAGGCATTGATCAGATAGCTACCTTAGAGACTAAACACCTAAGGCGGCCCTCTGAGAAAAAACGTGGAAAAACAGAGAAATCAATAAGCCTTGAAGTTTTGCAGAGTTATTTTTCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCAACTACAATGAAGCGCATATGTCGGCAGCATGGAATATCCCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCATTCCATGTCCAAGCTCAAGTGTGTTATTGAATCTACCCAAGGCGCTGAAGGAGCATTTCATTTGAATTCTCTAGGCACTAGTCCTCTTCCCACTGCTATTTTTTCCATTCCCGAGCCTTCTACTTCAACAAAGTTCAGCCAACACACCTCATTAACCACTAGGCCGTCAGAACCTCAGATGAAAGCGAATATTGAATTGGGTGTTTCTAAAGTATCAAAAAGAAACAGACATTTTGGTATGGAAGATCACTTGCTGGAAGCAAAGGTACAAAGTCCTGAGAAAGTAATTCATGACAAAGGTGGGTTCACTCAGAAGCTTGGTAAGTGCCTAAATGGGTCTAGAAATGGGAGTGAATCAAGTGAAGATAGCGCAAATCCTACTTCTTACAGTTCAAGCCATGATAGGCCCCCAAATGAAAGTTCACTTGCAAAAGATATATTTATTACATCCATCAATGAGCTATGTGTTGTGGCCGCAGAACCCGCACCTAAACCTGGAGAACCATTTGGAGGAATGCTTATTGAGGATGCTGGAAGTTCCAAGGATTTAAGAAATCTTTGTCCTTCGTCAGCAGATGCCATTTTGGAGGAGCAGGTTCCAGAAGTTTGTGGAACTAATCCTCCTAAGAAATGCATGGATACACTTTGTAACACAGTGACGCTTATTACTGcttggaaagaaaagaagagtatGACTATAAAGGCCACGTACAGAGAAGACATCTTAAGGTTTCGGATCTCTTTGACCTGTGGTATTGTAGAATTGAAAGAAGAAGTTGCTAAAAGATTGAAACTAGAGGTGGGTACTTTTGATATCAAGTATCTGGATGATGATCATGAGTGGGTTTTGATAGCCTGTGATGCAGACCTTCAGGAGTGCATGGATATTTTTATATCATCTGGTAGCAACATAATAAGGATTTTGGTCCATGAGACAGCATCCAATCTTGGAAGCTCTGGTGAAAGCTCAGGTGAGTGA 2868 0.4222 MVESDEENPGLPPKSKPAEEPAYIMDFDPDLESSWPFDQISFASNPASPFLFSPSFEQPFSPLWAFSDVDDDKHTKPTTSSFAGNSSSVNEDPVENDERKKLSPPLVPLPQLEIPDRYCLIKERMTKALRQFKELTEQNVLAQIWAPVRNGNQYVLTTSGQPFVLDPHSNGLYQYRTVSLTYAFPVDGERDGILGLPGRVFQKKLPEWTPDVQFYSSKEYSRRDHAQHYNVRGALALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEVLDHPYTQICNEGRKNALAEILEILTVVCENHQLPLAQAWVPCRHRSVLANGGGLKKSCSSFDGSCMGQVCMSTTDAALYVLDTGMSGFREACVEHHLQQGQGVAGRAFLSHNMCFCRNITQFCKFDYPLVHYALMFGLTSCFAICLRSSHTENDDYILEFFLPPKIIDFDEQKTLLGSLLATMNQNLRSLTIAVGIELKEEGSVEIIEATNERVYSRVEAILIAQFTKSPPGFDASPNMEMVPRDSSDPQIMMYYDDKNGGGDLGDNAARGIDQIATLETKHLRRPSEKKRGKTEKSISLEVLQSYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNHSMSKLKCVIESTQGAEGAFHLNSLGTSPLPTAIFSIPEPSTSTKFSQHTSLTTRPSEPQMKANIELGVSKVSKRNRHFGMEDHLLEAKVQSPEKVIHDKGGFTQKLGKCLNGSRNGSESSEDSANPTSYSSSHDRPPNESSLAKDIFITSINELCVVAAEPAPKPGEPFGGMLIEDAGSSKDLRNLCPSSADAILEEQVPEVCGTNPPKKCMDTLCNTVTLITAWKEKKSMTIKATYREDILRFRISLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDIFISSGSNIIRILVHETASNLGSSGESSGE 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4183 955 MobiDBLite consensus disorder prediction 74 106 - -
Sto8g4183 955 ProSiteProfiles PB1 domain profile. 860 942 IPR000270 GO:0005515
Sto8g4183 955 SMART PB1_new 860 942 IPR000270 GO:0005515
Sto8g4183 955 MobiDBLite consensus disorder prediction 738 770 - -
Sto8g4183 955 Pfam RWP-RK domain 580 628 IPR003035 -
Sto8g4183 955 Pfam PB1 domain 861 941 IPR000270 GO:0005515
Sto8g4183 955 MobiDBLite consensus disorder prediction 736 770 - -
Sto8g4183 955 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 954 - -
Sto8g4183 955 MobiDBLite consensus disorder prediction 1 23 - -
Sto8g4183 955 CDD PB1_NLP 861 941 IPR034891 -
Sto8g4183 955 PANTHER PROTEIN NLP8 3 954 IPR045012 GO:0003700
Sto8g4183 955 Gene3D - 856 941 - -
Sto8g4183 955 ProSiteProfiles RWP-RK domain profile. 567 648 IPR003035 -
Sto8g4183 955 SUPERFAMILY CAD & PB1 domains 856 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4183 Sto-Chr8 44608507 44614035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4183 841 955 NLP Transcription Factor Family AT1G64530 51.724 1.63e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sto8g4183 PB1 3.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4183 - - gmx:100786118 1332.78