Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g4163 ATGCCTGACACTTTTGCCATAGTGCCATCTACTATCTTTACTTGCAAAGAGGTAGAGGTTTTTAGTAGGGTAAGACATCCAAATCTTCTAACACTAATTGGAAGCTGTCCAGAATCTAGGTCACTTGTTTATGATTATCTTAATAATGGCAGCCTTGAAAACCACCTTGCACACAAAGACAAGACTCCACTTCCTTGGCAAATTCGAATATCCATTGCTGCTGACATATGTTCTGCTCTCATTTTTCTTCACTCCAGCAAGCCTCATATAATCCATGGGAATCTGAAGCCCAGTAAAGTTCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGCTGTGGGTATTTCTTCTTTTGTCCAGCACAGGTTGCATTCAGCTAACAGTAGCACAGGAGATAACAACCCAAATGACAGCTTGGTCTATGTGGATCCAGAATATCTTGTCATAGGGAAGCTTACACCAGAATCTGATGTGTATTCATTTGGAATCATATTGTTACAACTTTTAACTGGCAGACCACTTTTGGGGATAGTGAGGGATATGAAATGTGCATTGGAGAAAGAAAACCTTAAAGCAGTATTGGACTTTTCAGCTGGAGAATGGCCACTTGATCAAGCCGAACAGCTGGCATATTTGGCATTGAGGTGTTGTGAAAAGACTAGGTTGAACCGGCCAGATCTTGTGTCAGAAATCTGGAGTTTTCTTGAACCATTACGAACTTCTTGCATCAACATGCCACCATGTTTGAATTCTAAGAAGCTTGGTCGTGTTCCATCCCATTTTGTCTGCCCCATATTTCAGGAGGTCATGGAAGATCCTTATATAGCTGCGGATGGGTTTACATATGAAGCTGATGCTATACGAGGATGGTTGGATACTGGTCACAACACTTCGCCCATGACTAACCTTAAGCTTGAACACATGGACTTAGTGCCTAATTATGCTCTACAAAATGCGATTCAGGAGTGGCAGCAACTGCAAAAAGATCAGTTAGCATTAGCTCAAATTCATCAAGGCGTAGATTATTCTGTATTTGGCAAAATAGTCAATGCTAAAAATGCCAAAGAAGCTTGGGACACTTTAAAATTGGCTTACAAAGGAGTCGATAAAGCACAGAAATCCAAGTTGCAGTCATTAAGAAGAGAATATGAAAGGTATGAAATGTCTGGTTCAGAAACTATTGAGCAATATTTTTCTCGTGTTACTGATCTTGTTAACAAAATGAGAATATATAGAGAAAATATCCCTGATGGTAAAGTGGTTGAAAAAATTCTTCACACTATGCCAATTAAATATGATCATGTAGTGACTACAATTATAGAGTCACATAATCTTGAAGAAATGTCGGTTGCAGAGTTACAGGGTAGTATGGAAAGCCATGTTTCTAGAATTCTGGAGAAAACAGAAAAGCCAGTCGAAGAGGCTTTAAAAAGCCATGTGACTTTAAACAATGCAATTGAGATGAGAAGAGGCAACAATGACTTCAGGCAGATGAATCATGGAAGAGGAggtcaaaatttcaattttcaaaatcgAGAAAGAGGTAGAGAAACTCTGTTCTTCgcaagtaataatttttttgttgacgAAAATGTATGGTATTTGGATACTGGTTGTAGCAATCATATGTGTGGAAAAAAGGAGATGTTTTCTTCTCTTGATGAATCTTTCAATTCTTCAGTAAAATTTGGAAACAATACAAATATCCCAATATTGGGAAAAGGCCAAATTTCCATTAGATTGAAAGATGATActcagaattttatttttgatgtcTTTCATGCTCCTGGTTTACATCACAATTTGTTGAGCATGGAACAGTTGTCTGAGAAAAGCTATGACATGCGAGTTCATCAAGGATTTTGCACGTTGTTTGACAAGAATGGTAGATTTGTTGCCAAGTTGAGAATATTCCAGATTGTGTATGTGAAACTTGTGCAATGGGAAAGAAGCACAGAGAGACATTTCAAGTTGGAAAATCATGGAGAGCAAGGAAACCTCTTGAAATAG 2010 0.3721 MPDTFAIVPSTIFTCKEVEVFSRVRHPNLLTLIGSCPESRSLVYDYLNNGSLENHLAHKDKTPLPWQIRISIAADICSALIFLHSSKPHIIHGNLKPSKVLLDANFVAKLGAVGISSFVQHRLHSANSSTGDNNPNDSLVYVDPEYLVIGKLTPESDVYSFGIILLQLLTGRPLLGIVRDMKCALEKENLKAVLDFSAGEWPLDQAEQLAYLALRCCEKTRLNRPDLVSEIWSFLEPLRTSCINMPPCLNSKKLGRVPSHFVCPIFQEVMEDPYIAADGFTYEADAIRGWLDTGHNTSPMTNLKLEHMDLVPNYALQNAIQEWQQLQKDQLALAQIHQGVDYSVFGKIVNAKNAKEAWDTLKLAYKGVDKAQKSKLQSLRREYERYEMSGSETIEQYFSRVTDLVNKMRIYRENIPDGKVVEKILHTMPIKYDHVVTTIIESHNLEEMSVAELQGSMESHVSRILEKTEKPVEEALKSHVTLNNAIEMRRGNNDFRQMNHGRGGQNFNFQNRERGRETLFFASNNFFVDENVWYLDTGCSNHMCGKKEMFSSLDESFNSSVKFGNNTNIPILGKGQISIRLKDDTQNFIFDVFHAPGLHHNLLSMEQLSEKSYDMRVHQGFCTLFDKNGRFVAKLRIFQIVYVKLVQWERSTERHFKLENHGEQGNLLK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g4163 669 Gene3D Transferase(Phosphotransferase) domain 1 7 243 - -
Sto8g4163 669 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g4163 669 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 16 326 - -
Sto8g4163 669 Pfam gag-polypeptide of LTR copia-type 327 457 - -
Sto8g4163 669 Pfam Protein tyrosine and serine/threonine kinase 15 227 IPR001245 GO:0004672|GO:0006468
Sto8g4163 669 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Sto8g4163 669 PANTHER OS02G0152300 PROTEIN 16 326 - -
Sto8g4163 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 332 IPR013083 -
Sto8g4163 669 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Sto8g4163 669 SUPERFAMILY Protein kinase-like (PK-like) 14 238 IPR011009 -
Sto8g4163 669 CDD RING-Ubox_WDSUB1_like 261 302 - -
Sto8g4163 669 Pfam U-box domain 257 325 IPR003613 GO:0004842|GO:0016567
Sto8g4163 669 SUPERFAMILY RING/U-box 254 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g4163 Sto-Chr8 44372837 44380587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g4163 16 325 U-box Gene Family AT2G45910 55.205 9.62e-113 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sto8g4163 PK_Tyr_Ser-Thr 3.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g4163 - - gmx:100799675 504.212