LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g4098	ATGGAGCAGGACAATGTAGAATTTATTAGTGATGTCTATCCCGATAAGGAAACATGGAAACTTCGTGTTAGGATCATACGCTTATGGTATGTGAAAGAAGATTATGCACCCCATCATATTCTTGGTATTCACATGATCTTTCTAGATGAAAAGGGTTCTAAGATTCAGGCTTTTGTTACAAGGAAGAATTTGATTCTTATTCATAAGCCCCATTTAGAAGAGGGAAAATGCTACGAAGTTATTTATGGTCATGTTGGATTGAACAATGGAGAGTTTAGAGCAACTCGCCATGCTTATAGGATAAACTTTAATCTTTCTACTAAAGTCCAGCCATGTGAGACAACAATCCCTATTTTTGCATTTGATTTTGTGCCAATTTCAGATATATTATGCAAAAAAGCACCTAAAGGATATCTCATCGATGTAATTGGAGAGATAACATCTTATGGCCAGCTTGACCATTTTGAAAAGGATGGGAAGACATCTGATCGTTTTGTTATGGATATAGAAGATACTAGTGGCAAAAAAATCAAATGCACTCTCTTTGGTGATTATGCTTCAATGGCAATAAGGTACATCAATGAATCAATTGAGGCATTGAAGAATGTGTTCTGCAATTCATGGAATGCCTTTAAGTTGCATTTCAATTTGGATATTCCTGAAGTTGTACAATACAAACAAAGAGCAAGATTGAGTACCACATATCTCAGCCAACAAATGACCCAGTCGATTACTCAAACTTCTGTTAATTCACAAGATGAAATTTTCTCCTTGGATAAGTACAAGACAATTGGTGACATTAGAGAATCAACTGAAATTGGAACATTTGTAACACTTGGAACcattcacaaaataaaaagaagctATGGATGGTACTATGAATCATGCAACAAATGTAGGAAGAAGGTCAAAACTGTGGATGGACAATTGATTTGTCCAGGATGTGAGAAAACTCCACTACTGCTTATACCTAGATATAAGATTCATGTATTGGTCATGAATCACACTGGTAGTGCTTCTTTTGTTCTGTTTGATACTCAAGCATATAAGCTTATCCACAAAACTGCTAGAGAACTAAAGCTGCATCAAATTGAGGTTACAGCTGAGGATGGTTCATTTCCTGAAGAAATAGAACAAATTGTTCAAAGAAGATATCTATTCAAGGTCAAAATAACCGAGTTTAATGTTGAACAAAATTCAAGTTTTACAGTATCCAATGTCACTGATGATGCCACTTTAATAAATACTTTTATATCATCCCAAGGAATCAACCGGGAAGAGTTTGAAGGTGCAAGTGCAAATTCCACTTTGCCTAATATTTCTTTACGTCATCAAAACAATTTTGTTATTTGTGATGATGAAATTGATATATCATCCTCAAGTAGCTACACACCTTACAAACGAGGAATTCCTAGCTATCAAGATACAAGTGAATTGGAAAATATGAGGAGCTTTGAATCTTCCACATCAAAGCCAATGAAAGTTGTGAAGAAAGAAAAGTCTGAATGA	1509	0.3459	MEQDNVEFISDVYPDKETWKLRVRIIRLWYVKEDYAPHHILGIHMIFLDEKGSKIQAFVTRKNLILIHKPHLEEGKCYEVIYGHVGLNNGEFRATRHAYRINFNLSTKVQPCETTIPIFAFDFVPISDILCKKAPKGYLIDVIGEITSYGQLDHFEKDGKTSDRFVMDIEDTSGKKIKCTLFGDYASMAIRYINESIEALKNVFCNSWNAFKLHFNLDIPEVVQYKQRARLSTTYLSQQMTQSITQTSVNSQDEIFSLDKYKTIGDIRESTEIGTFVTLGTIHKIKRSYGWYYESCNKCRKKVKTVDGQLICPGCEKTPLLLIPRYKIHVLVMNHTGSASFVLFDTQAYKLIHKTARELKLHQIEVTAEDGSFPEEIEQIVQRRYLFKVKITEFNVEQNSSFTVSNVTDDATLINTFISSQGINREEFEGASANSTLPNISLRHQNNFVICDDEIDISSSSSYTPYKRGIPSYQDTSELENMRSFESSTSKPMKVVKKEKSE	502

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g4098	502	Gene3D	-	242	416	IPR012340	-
	Sto8g4098	502	CDD	RPA1_DBD_A_like	20	109	-	-
	Sto8g4098	502	PANTHER	REPLICATION FACTOR A 1, RFA1	34	468	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310
	Sto8g4098	502	Pfam	Replication factor-A C terminal domain	277	408	IPR013955	-
	Sto8g4098	502	PANTHER	BNAC07G49340D PROTEIN	34	468	-	-
	Sto8g4098	502	MobiDBLite	consensus disorder prediction	466	502	-	-
	Sto8g4098	502	CDD	RPA1_DBD_B_like	141	228	-	-
	Sto8g4098	502	SUPERFAMILY	Nucleic acid-binding proteins	260	409	IPR012340	-
	Sto8g4098	502	Gene3D	-	6	114	IPR012340	-
	Sto8g4098	502	CDD	RPA1_DBD_C	276	413	IPR013955	-
	Sto8g4098	502	Pfam	Domain of unknown function DUF223	45	139	IPR003871	-
	Sto8g4098	502	SUPERFAMILY	Nucleic acid-binding proteins	7	115	IPR012340	-
	Sto8g4098	502	MobiDBLite	consensus disorder prediction	466	491	-	-
	Sto8g4098	502	SUPERFAMILY	Nucleic acid-binding proteins	121	236	IPR012340	-
	Sto8g4098	502	Gene3D	-	115	237	IPR012340	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g4098	Sto-Chr8	43756521	43759376	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g4098	14	408	Core DNA Replication Machinery Family	AT5G08020	22.951	4.52e-17	82.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g4098	-		-	bvg:104885244	245.358