Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3608 ATGCTGGTTCCTGGGCTTGCTGAGAGAAGGCCATCACTGGTTCCTGGGGGTCATATTTTTGCCAATCTAGCATCAGAACAGTATGATCACGAATATAAGGGAGTCATCCACCATGTTGAGGCTGATGAAGTATTTTTCACGTTTGATGATCCTCAATTTCACTTGTATCACAAAGATGAAGATCTCTACAACGTTCAATTCACCTATAATAGAATCAATATGAGAATGTTATATCAGGTACTTGAGGCTGCAGAAAACTTAGGAAGAGAGTTCCCATTTCCAGAAGTGACCTCTAGAAGGAGAAATATTAAAACCCCCCATCTGGTGCCTATATCCGGTAAACTTAATGAGGAACAGATGCTTGCTGTCAAGAAGATTCTTGGATGCAGAGGCGCACCGCCTTATGTGATTCATGGCCCTCCAGGTACAGGAAAGACTAGCACAATAGTAGAGGCAGTACTGCAACTCTACAAAAATCATGGGAATTCTTGTATTCTTGTTTGTGCACCCTCAGATAGTGCAGCTGACTACGTATTGCAGAAACTTCTTGGTCAAAAGGCTGTCAAATTTCAAGATGATGAAATATTCAGGCTCAATGCATCTACCAGGCCTTACGAGGATGCCAAACCTGAAATAATGTGCTTCTGCTTTTTTGATGAGTTAATATTCAAGTGTCCTCCGGTCAAAGACCTCAAGCATTGTAAGATCATAATATCAACCTATATGAGTGCTTGTCTTCTTTATGCCAAAAATGTTGTCCGGGGTCACTTTTCTCACATTTTCTTCGATGAAGCTGGCCAAGCTTCAGAACTGAAAACAATGATCACGTTATCCCATCTCTGCACAAGGGagacaattgttattttagCTAGAGGCCCACATCAATTGGTTCTTGTAATCTATTCCAAAAAAGCAGAAGACAACGGATTGGGAGAATTGATTGCATGTAAAGATGACACTAGTTCTTTGATGGTGAGTGAAGACATCCTCCCTAACAAGGACTTCCCTGTTGTTGTCCTTGGTATCCATGGATATGATGAAAGAGAAGGAAATAACATATCTTGGTTTAACATATTGGAAGTGAATAAGGTCATAGAAGTAGTCAACAAGTTGACAGCTTGTGGAAATATGACAGAGGAAGACATTGGGATTATAACACTGTATAGGCAACAAGTGCTAAAAATAAAAGAGTCACTTGAAAGTATCAATTTGCCAGAAGTTATGGTTGGAACTATCGAGCAGTTTTTGGGACAGGAGAAACGTGTTATTATAATATCAACTGTTTGTGCTAGAATTAAACATGATGAATTTGATAGATTTAACCCTTTAGGATTGTTGAGCAATCATCGAAGATTAAATATGGCTATAACTTGTGCCATATCACTGCTGGTCATAATTGGGAATCGGTACATAATTTCCATGGATGATTATTGGAGAAAAGTCTTGTGGTATTGTTTGGACAATTCTTCTTATCTTTGTTGTTCTCTTCCTGAAAAAATGAAGCCTTATTATGAGAATAATGGAGATCAAGAAAATTTAGGTGTCTCAATGGGGTTGCGAGGAAGAACCTTCGAGCAAGAGGGCTTGTAA 1590 0.3887 MLVPGLAERRPSLVPGGHIFANLASEQYDHEYKGVIHHVEADEVFFTFDDPQFHLYHKDEDLYNVQFTYNRINMRMLYQVLEAAENLGREFPFPEVTSRRRNIKTPHLVPISGKLNEEQMLAVKKILGCRGAPPYVIHGPPGTGKTSTIVEAVLQLYKNHGNSCILVCAPSDSAADYVLQKLLGQKAVKFQDDEIFRLNASTRPYEDAKPEIMCFCFFDELIFKCPPVKDLKHCKIIISTYMSACLLYAKNVVRGHFSHIFFDEAGQASELKTMITLSHLCTRETIVILARGPHQLVLVIYSKKAEDNGLGELIACKDDTSSLMVSEDILPNKDFPVVVLGIHGYDEREGNNISWFNILEVNKVIEVVNKLTACGNMTEEDIGIITLYRQQVLKIKESLESINLPEVMVGTIEQFLGQEKRVIIISTVCARIKHDEFDRFNPLGLLSNHRRLNMAITCAISLLVIIGNRYIISMDDYWRKVLWYCLDNSSYLCCSLPEKMKPYYENNGDQENLGVSMGLRGRTFEQEGL 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3608 529 PANTHER DNA2/NAM7 HELICASE FAMILY 3 311 IPR045055 -
Sto8g3608 529 PANTHER DNA2/NAM7 HELICASE FAMILY 311 510 IPR045055 -
Sto8g3608 529 Gene3D - 231 309 IPR027417 -
Sto8g3608 529 Gene3D - 49 221 IPR027417 -
Sto8g3608 529 Gene3D - 310 498 IPR027417 -
Sto8g3608 529 Pfam AAA domain 114 202 IPR041677 GO:0004386
Sto8g3608 529 CDD DEXXQc_Helz-like 115 312 - -
Sto8g3608 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 481 IPR027417 -
Sto8g3608 529 CDD SF1_C_Upf1 311 485 IPR041679 -
Sto8g3608 529 PANTHER RNA HELICASE SDE3-RELATED 3 311 - -
Sto8g3608 529 PANTHER RNA HELICASE SDE3-RELATED 311 510 - -
Sto8g3608 529 Pfam AAA domain 317 469 IPR041679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3608 Sto-Chr8 34467427 34469155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3608 115 267 Core DNA Replication Machinery Family AT1G08840 32.484 1.14e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3608 K18422 - gmx:100801796 639.417