Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3385 ATGGAAGGTGGAGAGGGTCCCTCATTTCCCTTTGGCCAGCACCAATATAAAAACCCTGCAGTGGCGAtgcctacaactcaaatccaagatgttGATGCAACCAACGCCGGCATCAACGAGGAGCAACCAGCTCCTCACGCAGTAGTGCGAGAGTCAATCCATTGTATTCCTCTCGCTAACATGACTAGAATTATGAGGCAGATTCTTCCACAAAACACCAGAATCTCCAAGGATGACAAACAGACTCTCCAAGTTTGTGTCTCGGCATTTATTCGCTTTTTCACCAATAAGGCTAAAGAACAGTGTCATCAAGATTGTCGCATAACTATAACACCAGATGACATGCTTTAG 351 0.4245 MEGGEGPSFPFGQHQYKNPAVAMPTTQIQDVDATNAGINEEQPAPHAVVRESIHCIPLANMTRIMRQILPQNTRISKDDKQTLQVCVSAFIRFFTNKAKEQCHQDCRITITPDDML 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3385 116 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 115 IPR003958 -
Sto8g3385 116 SUPERFAMILY Histone-fold 55 116 IPR009072 GO:0046982
Sto8g3385 116 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 26 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Sto8g3385 116 Gene3D Histone, subunit A 46 116 IPR009072 GO:0046982
Sto8g3385 116 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 26 116 - -
Sto8g3385 116 MobiDBLite consensus disorder prediction 19 36 - -
Sto8g3385 116 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3385 Sto-Chr8 29803880 29805211 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3385 28 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 41.573 6.67e-20 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Sto8g3385 CBFD_NFYB_HMF 2e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3385 K08065 - sind:105174984 80.1073