Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3227 ATGGGAAGAGGAAGAGTGGTTCTGGAGAGAATAGAGAACAAGATAAACAGGCAAGTCACTTTCTCGAAGCGAAGGAATGGATTGCTCAAGAAAGCCTACGAGCTCTCCGTACTGTGCGATGCTGAAGTCGCTCTTATCATCTTCTCTAGCCGCGGCAAGCTTTTCCAGTACAGCAGCTCTGAGTCTGATTCCGTATAA 198 0.4747 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQYSSSESDSV 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3227 65 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Sto8g3227 65 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 61 - -
Sto8g3227 65 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto8g3227 65 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Sto8g3227 65 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g3227 65 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 61 - -
Sto8g3227 65 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g3227 65 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
Sto8g3227 65 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g3227 65 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g3227 65 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g3227 65 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3227 Sto-Chr8 26518287 26518878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3227 1 62 MADS-box Gene Family AT1G24260 85.484 1.20e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g3227 SRF-TF 6.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3227 K09264 - jre:108998622 114.775