Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3181 atggaaaatgaaGGCAACACTTCTGATCAGCATGCAAGCCAAAACGTTTTGGGGGATTTTGGAAGCACTGAGAACTTCAACCAGCAGCCATTAACAGATTTCAGCAACATCATCAATCAACCTCCTTTCGAACAGGTTCCGGAATTCATGTCAATTCCACCTTATATACTTGCTCAGTATCGTCAAGAAGAGCAAAAGATGATCAGTGCGGAAACTCCAATATCACTATCAAAAGCATGTGAGATGTTCATTCAAGAAATGAGCCTTCGTGCTTGGATGCAAACTGAAGAGAACAAGAGACGTGTTATTCAACGTCATGACGTTGTTGAATCCATTCATGAAAATAAACTCTACGACTTCTTAACTGATGTTATTCCATTGCAATACCAAGGTGGCCATCCATCTCTCGTGCCTCCACCTCAACCTCAACTTCagGAAGAGCATTCTGGACAAGCTGCAGAAAATCCTAATTATGCTGCTCCAATTGTTGATGAGAGTTTGATGAATATGGGGATTAATGTGACTgtgaAGCTAGGTCTTTCAATCACTCCAACTCGCATGGAGAGGGCAATGAGAGTCGATTTTGATGACTTGGAGATATTGGATAGTACAAAAAAAGTCGAGCTGTGCTCGAAAAAGCAACGGATCTTCATCGAAGAACTCAGCCTTCGTGAGTGGATTCGAACTAAAGAGAAGAACAAGAACACTATTGAGAGAAATGATTTTGCTGAAgaaattaatgaaaacaaaGTCTATGACTTCTTAGCTGATCTTGTTCCACTGGATCCGAATGACCATCCCTCCTCCAATGTCAAGGAAGAACATTGTGGAATAATAACTGCTGAAGAAGTTACGAATTCTGATGAGGAGGCCCCTGTGATGAATGTGGGCAATGTGATGAACCCAGAGAAATGCATTCGATATGAGGAAGTTGAATGGAGTCAAGCCAGCCATCGTGTGatgggaataaaataa 975 0.401 MENEGNTSDQHASQNVLGDFGSTENFNQQPLTDFSNIINQPPFEQVPEFMSIPPYILAQYRQEEQKMISAETPISLSKACEMFIQEMSLRAWMQTEENKRRVIQRHDVVESIHENKLYDFLTDVIPLQYQGGHPSLVPPPQPQLQEEHSGQAAENPNYAAPIVDESLMNMGINVTVKLGLSITPTRMERAMRVDFDDLEILDSTKKVELCSKKQRIFIEELSLREWIRTKEKNKNTIERNDFAEEINENKVYDFLADLVPLDPNDHPSSNVKEEHCGIITAEEVTNSDEEAPVMNVGNVMNPEKCIRYEEVEWSQASHRVMGIK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3181 324 Pfam Core histone H2A/H2B/H3/H4 61 109 IPR007125 GO:0003677
Sto8g3181 324 SUPERFAMILY Histone-fold 63 126 IPR009072 GO:0046982
Sto8g3181 324 SUPERFAMILY Histone-fold 209 260 IPR009072 GO:0046982
Sto8g3181 324 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 182 268 - -
Sto8g3181 324 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 63 158 - -
Sto8g3181 324 MobiDBLite consensus disorder prediction 1 22 - -
Sto8g3181 324 Gene3D Histone, subunit A 22 126 IPR009072 GO:0046982
Sto8g3181 324 Gene3D Histone, subunit A 173 260 IPR009072 GO:0046982
Sto8g3181 324 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 182 268 - -
Sto8g3181 324 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 158 - -
Sto8g3181 324 MobiDBLite consensus disorder prediction 131 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3181 Sto-Chr8 25867735 25907632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3181 185 278 CCAAT-HAP5 Transcription Factor Family AT1G56170 34.043 2.69e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g3181 CBFD_NFYB_HMF 1.2e-06 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3181 K08066 - vvi:100243367 88.9669