Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3132 ATGCCTGCTTTACTTGTCTCTGATGCTATTCCCTCTGAGACTCCTAAAGATacgaaggagaagaagaagataatcaGTAACGAGTCTCTCATTGAAGAAGAAGGGCTTTCgggcaagaagaagaagaaggagagcaaGAAGCGTAAAGCCTCCGATGTTGAATTGATGAAGGAGGATGGTGAAGAGAAGAGTGAGACTAGTTCCGAGTTGTTTGAGCCCGAGGGTACGAAAGCAAAGAgtgaagagaagaggaagaataaGAAGTCCAAGCTGGACGAGTCGGAAGCAGAAGAGGAAGAGGTTGACAAGCAGGATCCTAATGCAGTTTCCAACTTTAGGATATCCGTGCAGTTGGCAGCGAAGTTGAAGGAGAAGGGGATCGAATCGCTTTTTCCCATCCAGGCCATGACTTTTAATACTGTTTTCGATGGGTCTGATTTGGTTGGTCGAGCTCGCACCGGTCAGGGTAAAACTCTGGCCTTTGTGTTGCCCATATTAGAGTCTTTAACTAATGGTCCAGCAAAAGCATCAAGAAAGACTGGATATGGAAGGCCTCCATGTGTTCTTGTGCTTTTACCTACAAGAGAATTGGCATGTCAGGTGTTTGCTGATTTTGAAGTTTATGGTGGAGCAGTGGGATTGACTTCTTGCTGTTTATATGGTGGAACTTCATATAATGGTCAAGGAAAGAGAGGTGTAGATATAGTTGTTGGAACTCCAGGCCGCATAAAGGATCTTTTAGGGAGGGGTAATCTTGACCTGAGCCAACTAAGGTTCCGTGTCCTTGATGAGACCGATGAGATGCTGAAGATGGGTTTTATTGATGATGTTGAATTCATTCTGGGTAAGGTGGAAGATGTTAGTAAAGTTCAAACACTACTATTCAGTGCTACTTTGCCGGACTGGGTTAAAAATATTGCTGAAAGATTCCTGAAACCAGATAAGAAAACTGTTGACCTTGTTGGGAATGAGAAAATGAAAGCTAGCAAAAATGTTAGGCATATTGTTCTCCCATGTTTTTGGTCTGCTATAACCCAGGTTATCCCAGATGTTATTCGCTGCTATAGCAATGGTGGCCGAACAATTATTTTTACTGAGAGAAAGGAATCTACTTCTCAGCTTGCAGAGTCACTGCCTGGTGCACGACCTCTGCATGGTGATATACAGCAGAGTCAACGTGAGATTACATTGTCGGGATTCAGGAATGGGATATTTAAGACATTAGTCGCGACTAATGTGGCTGCTCGGGGTTTGGACATTGATGATGTTCAGTTAATTATTCAGTGTGAGCCTCCGCGTGATGTGGAAGACTACATCCATCGATCTGGGCGCACAGGAAGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAAGGCAAATATATCTAAAATAGAAAGGGCATCGGGTGTGAACTTTGAACACATATCTGCTCCCCAGCCTGCTGATATTGCCAATGCTCTTTGTGGAGAAGCTGCTACTATGATAACCTCAGTGTCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGATCTTTTAATCAGCTCAGGTTTATCTGCTGCTGAATTACTTGCAAAAGCTCTTGCCAAGACTGTTGGCTATACTGATATTAAGAAAAGATCAATTCTCACCTCCCAGGAGAATCAAGTGACATTACTTCTTGAGATTGGAAAACCCATCTTCACCCGATCTTTTTCATTTGGAATCCTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCTGAAGATCTAGATACATATCTTACTGGTCTGCAAAATGCTGCCGATGTAAGTTTAGAGGTGCTAGAAACATTGCCAAGTTTGCAAGAGAGAGAACAATCAAGAGGTAAATTTGGTGGTGGTGGTCGTCGAGGTGGCAGTCGTGGTGGTGGCTCTGGTAACAGATTTTCTGGTGGAAGGGGTGGTGGCGGCGGCCGGAATAGTGGATTTTCTAATCAGAGGAATGGTAGGTTTTCTGGTGGTTCTAGGGGTGGTAGAGGTCGCGGTGGTAAAAGGTGA 2091 0.4271 MPALLVSDAIPSETPKDTKEKKKIISNESLIEEEGLSGKKKKKESKKRKASDVELMKEDGEEKSETSSELFEPEGTKAKSEEKRKNKKSKLDESEAEEEEVDKQDPNAVSNFRISVQLAAKLKEKGIESLFPIQAMTFNTVFDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRPPCVLVLLPTRELACQVFADFEVYGGAVGLTSCCLYGGTSYNGQGKRGVDIVVGTPGRIKDLLGRGNLDLSQLRFRVLDETDEMLKMGFIDDVEFILGKVEDVSKVQTLLFSATLPDWVKNIAERFLKPDKKTVDLVGNEKMKASKNVRHIVLPCFWSAITQVIPDVIRCYSNGGRTIIFTERKESTSQLAESLPGARPLHGDIQQSQREITLSGFRNGIFKTLVATNVAARGLDIDDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRKANISKIERASGVNFEHISAPQPADIANALCGEAATMITSVSDSVIPAFKSAAEDLLISSGLSAAELLAKALAKTVGYTDIKKRSILTSQENQVTLLLEIGKPIFTRSFSFGILRRFLPEEKVEAVQGLTLTADGNGAVFDVPAEDLDTYLTGLQNAADVSLEVLETLPSLQEREQSRGKFGGGGRRGGSRGGGSGNRFSGGRGGGGGRNSGFSNQRNGRFSGGSRGGRGRGGKR 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3132 696 Pfam GUCT (NUC152) domain 538 633 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sto8g3132 696 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 29 666 - -
Sto8g3132 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 225 IPR027417 -
Sto8g3132 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 462 IPR027417 -
Sto8g3132 696 SMART ultradead3 126 335 IPR014001 -
Sto8g3132 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 317 IPR014001 -
Sto8g3132 696 SMART helicmild6 372 449 IPR001650 -
Sto8g3132 696 Gene3D - 557 627 - -
Sto8g3132 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 488 IPR001650 -
Sto8g3132 696 CDD SF2_C_DEAD 332 458 - -
Sto8g3132 696 CDD DEADc 118 312 - -
Sto8g3132 696 MobiDBLite consensus disorder prediction 13 40 - -
Sto8g3132 696 Gene3D - 50 320 IPR027417 -
Sto8g3132 696 MobiDBLite consensus disorder prediction 630 696 - -
Sto8g3132 696 MobiDBLite consensus disorder prediction 1 105 - -
Sto8g3132 696 Pfam Helicase conserved C-terminal domain 353 449 IPR001650 -
Sto8g3132 696 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 29 666 - -
Sto8g3132 696 CDD GUCT_RH7_like 545 630 - -
Sto8g3132 696 SUPERFAMILY RNA-binding domain, RBD 542 625 IPR035979 GO:0003676
Sto8g3132 696 MobiDBLite consensus disorder prediction 47 94 - -
Sto8g3132 696 Coils Coil 77 104 - -
Sto8g3132 696 Gene3D - 340 556 IPR027417 -
Sto8g3132 696 Pfam DEAD/DEAH box helicase 131 305 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3132 Sto-Chr8 24996771 25001597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3132 144 491 Eukaryotic Initiation Factors Gene Family AT1G72730 30.790 5.11e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3132 K16911 - jre:108998595 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g3132 8 24996771 25001597 Sto8g3132 8 24996771 25001597 ECH