Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3120 ATGTTTCCTTTACAACGAGGCAGTGAGCTGTTGATCCAGTTTTCTAATACTACTCAGCACCACCAACAGACCAAGATCTCACAAGATCCGATTCTGAATGATTTTGCTTCTTCTCCTCGTGTGGATGATTACCATAAAAATATCCATTTAGCCCCAAGGAATTATAAGAACAAGctttttcatcatcatcatcgtcatgAGTCTTCTGATGATCAtactaagaagaagaagaagatgatgatgattcaCAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTTCCCTTTATGCCTCCCTTAGATCCCTCCTCCCTCTCCACTACATCAAGGGAAAGCGTTCGGTGTCGGATCATATGAACGAGGCAGTGAATTACATAAAGCAGCTTCAGAAGAACATTAAAGAACTTGGTGCCAAGAGAGATGAACTGAAGAAAAAACAGTACCACTTGGAATCCAATAATCACCATCATGAGAGCCACCAAAACCCAACCACAAAATTTATTACTGTGCATCATCACAATAATAATGGTTCTTTGGGAATTGAAATCACCAGTGGCTTCCAAGAGGAAAGAACGATCAAACTTTCAAAATTGCTGGAATTGTTGATTCAAGAACGAGGGCTTGAGGTTGTTAATTGCGTCTCCACAAAAGTCAATGGTAGGGTACTCCATAGTGTCCACTGTGAGGTTAAAAATTCAGACAGTGTAGATCTAGCTGAGCTCAGAAGGAAAATTGCAAATGCATGTATGTGTGATTCCGTGATTTAA 771 0.38 MFPLQRGSELLIQFSNTTQHHQQTKISQDPILNDFASSPRVDDYHKNIHLAPRNYKNKLFHHHHRHESSDDHTKKKKKMMMIHREIERQRRQEMASLYASLRSLLPLHYIKGKRSVSDHMNEAVNYIKQLQKNIKELGAKRDELKKKQYHLESNNHHHESHQNPTTKFITVHHHNNNGSLGIEITSGFQEERTIKLSKLLELLIQERGLEVVNCVSTKVNGRVLHSVHCEVKNSDSVDLAELRRKIANACMCDSVI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3120 256 CDD bHLH_AtORG2_like 83 146 - -
Sto8g3120 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Sto8g3120 256 SMART finulus 84 136 IPR011598 GO:0046983
Sto8g3120 256 Pfam Helix-loop-helix DNA-binding domain 83 131 IPR011598 GO:0046983
Sto8g3120 256 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 249 IPR015660 GO:0003700|GO:0006357
Sto8g3120 256 Coils Coil 120 147 - -
Sto8g3120 256 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
Sto8g3120 256 Gene3D - 66 160 IPR036638 GO:0046983
Sto8g3120 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 157 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3120 Sto-Chr8 24854300 24856780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3120 83 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.197 1.13e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto8g3120 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3120 - - gmx:100780888 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g3120 8 24854300 24856780 Sto8g3120 8 24854300 24856780 ECH