Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3109 ATGTCAATTCCACCTTATATGCTTGCTCAGTATCGTCAAGAAGAGCAAAAGAACCAGGCATTACAAATGTTTTGGCAACAACAATTGTATGAGATGCAGAATACTGACGCAAATAGGGGCCAAAATCAATTGCCTTTGGCTCGAATCAAGAGAATCATGAAGTTTGATTCTGATGTAAAGATGATCAGTGCGGAAACTCCAATATTACTATCAAAAACATGTGAGATGTTCATTCAAGAAATGAGCCTTCGTGCTTGGATGCGAACTGAAGAGAACAAGAGACGTACTATTCAACGTCATGACGCTGCTGAATCCATTTATGAAAATAAACTCTATGACTTCTTAACTGATGTTATTCCATTGCAATACCATGGTGGCCATCCATCTCTCGTGCCTCCACCTCAACCTCAACTTcagGAAGAGCATTCTGGACAAGCTGCAGAAAATCCTAATTATGCTACTCTAATTGTTGATGAGAGTATGATGAATATAGGGATTAATGTGACTgacCAGCAAGCTGAAAGTAGCCAGCAATATACTAAAGCCTTCACATTGGATCCATCCATTGTGCCGCCTCATCCTCAGTTTCCCTACAATTTCTTTCCCCCAAATTAA 615 0.3935 MSIPPYMLAQYRQEEQKNQALQMFWQQQLYEMQNTDANRGQNQLPLARIKRIMKFDSDVKMISAETPILLSKTCEMFIQEMSLRAWMRTEENKRRTIQRHDAAESIYENKLYDFLTDVIPLQYHGGHPSLVPPPQPQLQEEHSGQAAENPNYATLIVDESMMNIGINVTDQQAESSQQYTKAFTLDPSIVPPHPQFPYNFFPPN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3109 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 101 IPR003958 -
Sto8g3109 204 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 180 - -
Sto8g3109 204 MobiDBLite consensus disorder prediction 126 146 - -
Sto8g3109 204 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 12 180 IPR027170 GO:0003700|GO:0006355|GO:0016602
Sto8g3109 204 Gene3D Histone, subunit A 5 120 IPR009072 GO:0046982
Sto8g3109 204 SUPERFAMILY Histone-fold 15 115 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3109 Sto-Chr8 24702507 24705660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3109 21 120 CCAAT-HAP5 Transcription Factor Family AT1G56170 56.000 5.86e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g3109 CBFD_NFYB_HMF 3.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3109 K08066 - mnt:21409721 150.599